SNP Report

Basic Infomation

Name	rs11231671 dbSNP
Location	chr:11,63761169
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 83)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10751004	0.83[EUR][1000 genomes]
rs10792424	0.83[EUR][1000 genomes]
rs10897459	0.92[CEU][hapmap];0.86[TSI][hapmap]
rs10897465	0.92[CEU][hapmap];0.89[CHB][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes]
rs10897466	0.82[JPT][hapmap];0.85[TSI][hapmap]
rs10897467	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10897468	0.81[EUR][1000 genomes]
rs10897469	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10897470	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11231628	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs11231643	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11231646	0.85[CEU][hapmap];0.84[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs11231655	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11231662	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[GIH][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11231663	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11231664	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11231670	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11600062	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11601228	0.84[EUR][1000 genomes]
rs11605797	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[GIH][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12417157	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12417507	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12421757	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12786124	0.92[CEU][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap]
rs12790749	0.84[EUR][1000 genomes]
rs12797540	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12798491	0.82[JPT][hapmap];0.82[TSI][hapmap]
rs12800703	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12808604	0.84[EUR][1000 genomes]
rs1386346	0.83[TSI][hapmap]
rs1684950	0.83[EUR][1000 genomes]
rs1783964	0.81[EUR][1000 genomes]
rs2129467	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2318126	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs3019782	0.81[EUR][1000 genomes]
rs320121	0.82[EUR][1000 genomes]
rs320156	0.81[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs34134698	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34595065	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740636	0.80[TSI][hapmap]
rs3740637	0.96[CEU][hapmap];0.89[CHB][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4426138	0.80[EUR][1000 genomes]
rs449047	0.92[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap]
rs454474	0.92[CEU][hapmap];0.85[GIH][hapmap];0.83[TSI][hapmap]
rs473243	0.80[EUR][1000 genomes]
rs479975	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs481835	0.82[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs483340	0.81[MEX][hapmap];0.83[TSI][hapmap];0.83[EUR][1000 genomes]
rs487540	0.83[EUR][1000 genomes]
rs488082	0.83[EUR][1000 genomes]
rs492357	0.96[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4980499	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4980500	1.00[CEU][hapmap];0.89[CHB][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4980501	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4980512	0.80[TSI][hapmap]
rs4980516	0.83[EUR][1000 genomes]
rs4980517	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4980530	0.92[CEU][hapmap];0.86[TSI][hapmap]
rs499118	0.83[EUR][1000 genomes]
rs500493	0.82[JPT][hapmap];0.81[TSI][hapmap]
rs501278	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs502858	0.83[EUR][1000 genomes]
rs504060	0.96[CEU][hapmap];0.89[CHB][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs509701	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs529915	0.81[EUR][1000 genomes]
rs539432	0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs553724	0.82[EUR][1000 genomes]
rs562865	0.83[EUR][1000 genomes]
rs567386	0.81[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes]
rs578295	0.83[EUR][1000 genomes]
rs579669	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs581355	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6591830	0.80[EUR][1000 genomes]
rs67136175	0.91[EUR][1000 genomes]
rs709594	0.82[EUR][1000 genomes]
rs7112348	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs728919	0.80[TSI][hapmap]
rs7926608	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7928990	0.81[EUR][1000 genomes]
rs7936614	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7938498	0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs7942318	0.83[EUR][1000 genomes]
rs928948	0.92[CEU][hapmap];0.81[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
OTUB1	Distal transcriptional regulation
RCOR2	Distal transcriptional regulation
OTUB1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 11)

eQTL related gene	Source
MS4A6E	SCAN
MS4A7	SCAN
SCYL1	SCAN
C11orf95	SCAN
RBM4B	SCAN
MS4A12	SCAN
SLC22A12	SCAN
FTH1	SCAN
GANAB	SCAN
HNRNPUL2	SCAN
SLC22A24	SCAN