SNP Report

Basic Infomation

Name	rs7928990 dbSNP
Location	chr:11,63731598
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 60)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10751004	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792424	0.95[EUR][1000 genomes]
rs10897464	0.91[EUR][1000 genomes]
rs10897466	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10897467	0.81[EUR][1000 genomes]
rs10897468	0.92[EUR][1000 genomes]
rs10897470	0.81[EUR][1000 genomes]
rs11231653	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11231662	0.81[EUR][1000 genomes]
rs11231663	0.81[EUR][1000 genomes]
rs11231664	0.81[EUR][1000 genomes]
rs11231670	0.81[EUR][1000 genomes]
rs11231671	0.81[EUR][1000 genomes]
rs11600062	0.80[EUR][1000 genomes]
rs11601228	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11607028	0.91[EUR][1000 genomes]
rs12790749	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12798491	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12800703	0.81[EUR][1000 genomes]
rs12808604	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1386346	0.92[EUR][1000 genomes]
rs1684950	0.95[EUR][1000 genomes]
rs1783964	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2129467	0.81[EUR][1000 genomes]
rs2508584	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3019782	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs320121	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs320156	0.95[EUR][1000 genomes]
rs35492216	0.91[EUR][1000 genomes]
rs3740636	0.91[EUR][1000 genomes]
rs4426138	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs473243	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs481835	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs483340	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs487540	0.95[EUR][1000 genomes]
rs488082	0.95[EUR][1000 genomes]
rs492357	0.81[EUR][1000 genomes]
rs4980512	0.91[EUR][1000 genomes]
rs4980516	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs499118	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs500493	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs502858	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs504314	0.84[EUR][1000 genomes]
rs528927	0.90[EUR][1000 genomes]
rs529915	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs539432	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs553724	0.94[EUR][1000 genomes]
rs562865	0.93[EUR][1000 genomes]
rs567386	0.94[EUR][1000 genomes]
rs578295	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6591830	0.96[EUR][1000 genomes]
rs709594	0.94[EUR][1000 genomes]
rs7111130	0.81[EUR][1000 genomes]
rs728919	0.91[EUR][1000 genomes]
rs7926608	0.81[EUR][1000 genomes]
rs7936614	0.81[EUR][1000 genomes]
rs7938498	0.95[EUR][1000 genomes]
rs7942318	0.95[EUR][1000 genomes]
rs7951529	0.91[EUR][1000 genomes]
rs9943682	0.89[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RNU6-45	Distal transcriptional regulation
COX8A	Distal transcriptional regulation
ENSG00000256100	Distal transcriptional regulation
NAA40	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)