SNP Report
Basic Infomation
| Name | rs10897466 dbSNP |
|---|---|
| Location | chr:11,63723238 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 68)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751004 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10792424 | 0.94[EUR][1000 genomes] |
| rs10897464 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs10897467 | 0.81[EUR][1000 genomes] |
| rs10897468 | 0.91[EUR][1000 genomes] |
| rs11231646 | 0.85[CEU][hapmap];0.80[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs11231653 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11231655 | 0.80[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs11231657 | 0.90[LWK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11231659 | 0.81[AFR][1000 genomes] |
| rs11231662 | 0.85[TSI][hapmap] |
| rs11231671 | 0.82[JPT][hapmap];0.85[TSI][hapmap] |
| rs11601228 | 0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11605797 | 0.85[TSI][hapmap] |
| rs11607028 | 0.97[EUR][1000 genomes] |
| rs12417507 | 0.82[EUR][1000 genomes] |
| rs12421757 | 0.82[EUR][1000 genomes] |
| rs12786124 | 0.81[TSI][hapmap] |
| rs12790749 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12797540 | 0.82[EUR][1000 genomes] |
| rs12798491 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12800703 | 0.80[CEU][hapmap] |
| rs12808604 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1386346 | 1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs1684950 | 0.94[EUR][1000 genomes] |
| rs1783964 | 0.95[EUR][1000 genomes] |
| rs2508584 | 0.89[EUR][1000 genomes] |
| rs3019782 | 0.95[EUR][1000 genomes] |
| rs320121 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs320156 | 1.00[CEU][hapmap];0.86[GIH][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs35492216 | 0.90[EUR][1000 genomes] |
| rs3740636 | 1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs3740637 | 0.84[MEX][hapmap];0.82[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs4426138 | 0.92[EUR][1000 genomes] |
| rs473243 | 0.91[EUR][1000 genomes] |
| rs481835 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs483340 | 1.00[CEU][hapmap];0.93[GIH][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs487540 | 0.94[EUR][1000 genomes] |
| rs488082 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs4980499 | 0.84[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs4980500 | 0.84[MEX][hapmap];0.83[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs4980512 | 1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4980516 | 0.94[EUR][1000 genomes] |
| rs499118 | 0.94[EUR][1000 genomes] |
| rs500493 | 0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs502858 | 0.94[EUR][1000 genomes] |
| rs504314 | 0.83[EUR][1000 genomes] |
| rs509701 | 0.82[TSI][hapmap] |
| rs528927 | 0.84[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs529915 | 0.95[EUR][1000 genomes] |
| rs539432 | 1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes] |
| rs553724 | 1.00[CEU][hapmap];0.93[EUR][1000 genomes] |
| rs562865 | 1.00[CEU][hapmap];0.92[EUR][1000 genomes] |
| rs567386 | 1.00[CEU][hapmap];0.93[MEX][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes] |
| rs578295 | 0.94[EUR][1000 genomes] |
| rs58341870 | 0.87[AFR][1000 genomes] |
| rs6591830 | 0.92[EUR][1000 genomes] |
| rs709594 | 0.93[EUR][1000 genomes] |
| rs7111130 | 0.85[EUR][1000 genomes] |
| rs7112348 | 0.81[EUR][1000 genomes] |
| rs728919 | 1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs7926608 | 0.81[EUR][1000 genomes] |
| rs7928990 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7936614 | 0.81[EUR][1000 genomes] |
| rs7938498 | 1.00[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs7942318 | 0.94[EUR][1000 genomes] |
| rs7951529 | 0.97[EUR][1000 genomes] |
| rs9943682 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NAA40 | Proximal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| C11orf95 | Distal transcriptional regulation |
| NAA40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014