SNP Report
Basic Infomation
| Name | rs11231659 dbSNP |
|---|---|
| Location | chr:11,63730581 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897466 | 0.81[AFR][1000 genomes] |
| rs10897471 | 0.91[EUR][1000 genomes] |
| rs11231649 | 1.00[EUR][1000 genomes] |
| rs11231650 | 1.00[EUR][1000 genomes] |
| rs11231657 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231658 | 1.00[EUR][1000 genomes] |
| rs11231660 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231661 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11231668 | 0.94[EUR][1000 genomes] |
| rs11231672 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11601228 | 0.85[AFR][1000 genomes] |
| rs12280970 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12283313 | 1.00[EUR][1000 genomes] |
| rs12291575 | 0.91[EUR][1000 genomes] |
| rs320113 | 0.91[EUR][1000 genomes] |
| rs320114 | 0.91[EUR][1000 genomes] |
| rs3903058 | 1.00[EUR][1000 genomes] |
| rs56687142 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs58341870 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60668438 | 1.00[EUR][1000 genomes] |
| rs744864 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7939571 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs873928 | 1.00[EUR][1000 genomes] |
| rs9943474 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RNU6-45 | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014