SNP Report
Basic Infomation
| Name | rs12283313 dbSNP |
|---|---|
| Location | chr:11,63774301 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897471 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs11231649 | 0.88[CEU][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231650 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231657 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs11231658 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231659 | 1.00[EUR][1000 genomes] |
| rs11231660 | 1.00[EUR][1000 genomes] |
| rs11231661 | 0.93[EUR][1000 genomes] |
| rs11231668 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11231672 | 0.91[EUR][1000 genomes] |
| rs12280970 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs12291575 | 1.00[CEU][hapmap];0.91[EUR][1000 genomes] |
| rs320113 | 1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs320114 | 0.91[EUR][1000 genomes] |
| rs3903058 | 1.00[EUR][1000 genomes] |
| rs56687142 | 0.88[EUR][1000 genomes] |
| rs58341870 | 1.00[EUR][1000 genomes] |
| rs60668438 | 1.00[EUR][1000 genomes] |
| rs7107584 | 1.00[MEX][hapmap];0.87[TSI][hapmap] |
| rs744864 | 1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs7939571 | 0.91[EUR][1000 genomes] |
| rs873928 | 1.00[EUR][1000 genomes] |
| rs9943474 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OTUB1 | Distal transcriptional regulation |
| MACROD1 | Distal transcriptional regulation |
| COX8A | Distal transcriptional regulation |
| ENSG00000256100 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| BSPRY | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014