SNP Report

Basic Infomation

Name	rs320113 dbSNP
Location	chr:11,63755215
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 23)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897471	0.83[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11231649	0.88[CEU][hapmap];0.90[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs11231650	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11231657	1.00[CEU][hapmap];0.83[GIH][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs11231658	0.91[EUR][1000 genomes]
rs11231659	0.91[EUR][1000 genomes]
rs11231660	0.91[EUR][1000 genomes]
rs11231661	0.85[EUR][1000 genomes]
rs11231668	0.85[EUR][1000 genomes]
rs11231672	1.00[EUR][1000 genomes]
rs12280970	1.00[CEU][hapmap];0.83[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12283313	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs12291575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs320114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3903058	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56687142	0.97[EUR][1000 genomes]
rs58341870	0.91[EUR][1000 genomes]
rs60668438	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7107584	1.00[MEX][hapmap]
rs744864	0.83[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7939571	1.00[EUR][1000 genomes]
rs873928	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9943474	0.97[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
STIP1	Distal transcriptional regulation
VMP1	Distal transcriptional regulation
C11orf84	Distal transcriptional regulation
RCOR2	Distal transcriptional regulation
COX8A	Distal transcriptional regulation
ENSG00000256100	Distal transcriptional regulation
MACROD1	Distal transcriptional regulation
OTUB1	Distal transcriptional regulation
HIST2H2BE	Distal transcriptional regulation
HIST2H2AC	Distal transcriptional regulation
BOLA1	Distal transcriptional regulation
HIST2H2AB	Distal transcriptional regulation
OTUB1	RNA binding protein mediated regulation
ENSG00000256100	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)