SNP Report
Basic Infomation
| Name | rs11231649 dbSNP |
|---|---|
| Location | chr:11,63710016 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897471 | 0.88[CEU][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs11231631 | 0.88[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs11231650 | 0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231657 | 0.88[CEU][hapmap];0.84[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs11231658 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11231659 | 1.00[EUR][1000 genomes] |
| rs11231660 | 1.00[EUR][1000 genomes] |
| rs11231661 | 0.93[EUR][1000 genomes] |
| rs11231668 | 0.94[EUR][1000 genomes] |
| rs11231672 | 0.91[EUR][1000 genomes] |
| rs12280970 | 0.88[CEU][hapmap];0.84[GIH][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs12283313 | 0.88[CEU][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12291575 | 0.88[CEU][hapmap];0.90[CHB][hapmap];0.91[EUR][1000 genomes] |
| rs320113 | 0.88[CEU][hapmap];0.90[CHB][hapmap];0.84[GIH][hapmap];0.82[JPT][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs320114 | 0.91[EUR][1000 genomes] |
| rs3903058 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs56687142 | 0.88[EUR][1000 genomes] |
| rs58341870 | 1.00[EUR][1000 genomes] |
| rs60668438 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7107584 | 0.87[TSI][hapmap] |
| rs744864 | 0.88[CEU][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs7939571 | 0.91[EUR][1000 genomes] |
| rs873928 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs958333 | 1.00[YRI][hapmap] |
| rs9943474 | 0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RCOR2 | Distal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| NAA40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| WIBG | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014