SNP Report
Basic Infomation
| Name | rs11231628 dbSNP |
|---|---|
| Location | chr:11,63647524 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 67)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736731 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs10751001 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs10792421 | 1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10792422 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10792423 | 0.91[ASN][1000 genomes] |
| rs10897452 | 0.87[ASN][1000 genomes] |
| rs10897453 | 0.93[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs10897454 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs10897456 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs10897459 | 1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10897465 | 0.81[CEU][hapmap] |
| rs11231600 | 1.00[JPT][hapmap] |
| rs11231623 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11231640 | 0.81[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11231643 | 0.87[EUR][1000 genomes] |
| rs11231646 | 0.88[TSI][hapmap] |
| rs11231662 | 0.92[CEU][hapmap];0.81[MEX][hapmap];0.83[TSI][hapmap] |
| rs11231664 | 0.92[CEU][hapmap] |
| rs11231670 | 0.92[CEU][hapmap] |
| rs11231671 | 0.92[CEU][hapmap];0.81[TSI][hapmap] |
| rs11605500 | 0.90[ASN][1000 genomes] |
| rs11605797 | 0.92[CEU][hapmap];0.84[TSI][hapmap] |
| rs12277481 | 0.91[ASN][1000 genomes] |
| rs12417507 | 0.80[EUR][1000 genomes] |
| rs12421757 | 0.80[EUR][1000 genomes] |
| rs12576275 | 0.92[ASN][1000 genomes] |
| rs12786124 | 1.00[CEU][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs12792726 | 0.92[EUR][1000 genomes] |
| rs12797540 | 0.80[EUR][1000 genomes] |
| rs12800703 | 0.87[CEU][hapmap] |
| rs1872772 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs224173 | 0.97[EUR][1000 genomes] |
| rs2318126 | 1.00[CEU][hapmap];0.98[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs2840079 | 0.80[CHD][hapmap];0.90[JPT][hapmap] |
| rs3019785 | 0.96[EUR][1000 genomes] |
| rs3740637 | 0.88[CEU][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs3802941 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs3850943 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs449047 | 1.00[CEU][hapmap];0.83[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs454474 | 1.00[CEU][hapmap];0.86[GIH][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs492357 | 0.89[CEU][hapmap] |
| rs4963433 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4980499 | 0.92[CEU][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs4980500 | 0.92[CEU][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs4980503 | 0.90[ASN][1000 genomes] |
| rs4980505 | 0.95[ASN][1000 genomes] |
| rs4980507 | 0.95[ASN][1000 genomes] |
| rs4980528 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4980529 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs4980530 | 1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs4980532 | 0.90[ASN][1000 genomes] |
| rs4980533 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs504060 | 0.89[CEU][hapmap] |
| rs509701 | 0.88[CEU][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap] |
| rs61886128 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6591825 | 0.86[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs7102006 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs7108375 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7110843 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7118913 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs7928919 | 0.88[EUR][1000 genomes] |
| rs7937314 | 0.92[ASN][1000 genomes] |
| rs7939416 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7944519 | 0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs7948656 | 0.87[ASN][1000 genomes] |
| rs923247 | 0.95[ASN][1000 genomes] |
| rs928948 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000202089 | Distal transcriptional regulation |
| MARK2 | Distal transcriptional regulation |
| MARK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014