SNP Report
Basic Infomation
| Name | rs2840079 dbSNP |
|---|---|
| Location | chr:11,63688693 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 43)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736731 | 0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10792421 | 0.89[CEU][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs10792422 | 0.86[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10792423 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10897452 | 0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10897453 | 0.93[ASW][hapmap];0.85[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10897454 | 0.93[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11231600 | 0.89[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs11231624 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11231628 | 0.80[CHD][hapmap];0.90[JPT][hapmap] |
| rs11231637 | 0.89[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs11231640 | 0.86[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11231646 | 0.85[CEU][hapmap];0.88[CHB][hapmap] |
| rs11605500 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12277481 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12576275 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1486936 | 0.89[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs1872772 | 0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs320109 | 0.89[CEU][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs3802941 | 0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[GIH][hapmap];0.89[MEX][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4143327 | 0.88[EUR][1000 genomes] |
| rs480211 | 0.81[TSI][hapmap] |
| rs4980503 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4980505 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4980507 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4980528 | 0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4980529 | 0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4980532 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4980533 | 0.86[ASW][hapmap];0.89[CEU][hapmap];0.87[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs540389 | 0.81[TSI][hapmap] |
| rs6421686 | 0.83[EUR][1000 genomes] |
| rs6591825 | 0.89[CEU][hapmap];0.87[CHB][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7102006 | 0.89[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7105288 | 0.89[CEU][hapmap];0.86[GIH][hapmap];0.94[MEX][hapmap];0.95[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs7108375 | 0.89[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7110843 | 0.85[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7118913 | 0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.98[TSI][hapmap];0.81[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7121067 | 0.82[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs7937314 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7944519 | 0.93[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7948656 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs923247 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs928948 | 0.80[CHD][hapmap];0.90[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RCOR2 | Proximal transcriptional regulation |
| NAA40 | Distal transcriptional regulation |
| OTUB1 | Distal transcriptional regulation |
| RCOR2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014