SNP Report
Basic Infomation
| Name | rs540389 dbSNP |
|---|---|
| Location | chr:11,63738344 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897464 | 0.94[CHB][hapmap] |
| rs10897468 | 0.80[EUR][1000 genomes] |
| rs11231640 | 0.81[TSI][hapmap] |
| rs2840079 | 0.81[TSI][hapmap] |
| rs320156 | 0.83[CHB][hapmap] |
| rs3740636 | 0.83[CHB][hapmap] |
| rs480211 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs483340 | 0.83[CHB][hapmap] |
| rs488082 | 0.83[CHB][hapmap] |
| rs4980512 | 0.83[CHB][hapmap] |
| rs4980515 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs528927 | 0.83[CHB][hapmap] |
| rs553724 | 0.81[CHB][hapmap] |
| rs562865 | 0.83[CHB][hapmap] |
| rs567386 | 0.83[CHB][hapmap] |
| rs728919 | 0.83[CHB][hapmap] |
| rs7938498 | 0.83[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COX8A | Proximal transcriptional regulation |
| ENSG00000256100 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014