SNP Report
Basic Infomation
| Name | rs10897456 dbSNP |
|---|---|
| Location | chr:11,63629535 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10751001 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10897459 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11231623 | 0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11231628 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11231637 | 0.87[ASN][1000 genomes] |
| rs11231643 | 0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12786124 | 0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12792726 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1486936 | 0.87[ASN][1000 genomes] |
| rs224173 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2318126 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3019785 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3850943 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4143327 | 0.85[ASN][1000 genomes] |
| rs449047 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs454474 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4963433 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4980530 | 0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs61886128 | 0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7105288 | 0.87[ASN][1000 genomes] |
| rs7121067 | 0.87[ASN][1000 genomes] |
| rs7928919 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7939416 | 0.86[EUR][1000 genomes] |
| rs928948 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MARK2 | Distal transcriptional regulation |
| MARK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014