SNP Report
Basic Infomation
| Name | rs523586 dbSNP |
|---|---|
| Location | chr:11,63784090 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897469 | 0.81[ASN][1000 genomes] |
| rs10897470 | 0.82[AMR][1000 genomes] |
| rs11231662 | 0.81[AMR][1000 genomes] |
| rs11231663 | 0.84[AMR][1000 genomes] |
| rs11231664 | 0.81[AMR][1000 genomes] |
| rs11231670 | 0.84[AMR][1000 genomes] |
| rs11600062 | 0.84[AMR][1000 genomes] |
| rs11601228 | 0.80[AMR][1000 genomes] |
| rs12417157 | 0.81[ASN][1000 genomes] |
| rs12421758 | 0.83[AFR][1000 genomes] |
| rs12790749 | 0.86[AMR][1000 genomes] |
| rs12800703 | 0.81[AMR][1000 genomes] |
| rs12808604 | 0.87[AMR][1000 genomes] |
| rs2129467 | 0.81[AMR][1000 genomes] |
| rs479975 | 0.84[AMR][1000 genomes] |
| rs489976 | 0.90[AFR][1000 genomes] |
| rs492357 | 0.84[AMR][1000 genomes] |
| rs4980501 | 0.81[AMR][1000 genomes] |
| rs4980517 | 0.81[AMR][1000 genomes] |
| rs501278 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs504060 | 0.84[AMR][1000 genomes] |
| rs509701 | 0.84[AMR][1000 genomes] |
| rs579669 | 0.81[EUR][1000 genomes] |
| rs581355 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RCOR2 | Distal transcriptional regulation |
| MACROD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014