SNP Report

Basic Infomation

Name	rs1538822 dbSNP
Location	chr:10,82120104
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160056	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10749559	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs10788571	0.81[CHD][hapmap];0.87[JPT][hapmap]
rs10788626	0.85[CEU][hapmap]
rs10788627	0.84[CEU][hapmap]
rs10887761	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10887871	0.81[CHB][hapmap]
rs10887873	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs10887881	0.81[CEU][hapmap]
rs10887884	0.81[CEU][hapmap]
rs10887890	0.81[CEU][hapmap]
rs11202652	0.87[JPT][hapmap]
rs11202832	0.81[CHB][hapmap];1.00[CHD][hapmap]
rs11202923	0.85[CEU][hapmap]
rs12262228	0.85[ASN][1000 genomes]
rs1340381	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs14073	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs1870143	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1870144	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1870145	0.81[CEU][hapmap]
rs1934697	0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3195896	0.81[CHB][hapmap]
rs3195899	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs4146515	0.87[JPT][hapmap]
rs4934134	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4934147	0.81[CHB][hapmap]
rs4934165	0.85[CEU][hapmap]
rs4934167	0.85[CEU][hapmap]
rs4934170	0.81[CEU][hapmap]
rs55901776	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6585989	0.81[CHB][hapmap]
rs6585994	0.90[CHB][hapmap];0.87[CHD][hapmap]
rs7067612	0.85[ASN][1000 genomes]
rs7071752	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.85[ASN][1000 genomes]
rs7074356	0.90[CHB][hapmap]
rs7081889	0.96[CHD][hapmap]
rs7086496	0.81[CEU][hapmap]
rs7088374	0.85[ASN][1000 genomes]
rs7092237	0.96[CHD][hapmap]
rs7097080	0.90[CHB][hapmap]
rs7898558	0.81[CHB][hapmap]
rs7907224	0.81[CHB][hapmap]
rs7909792	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8735	0.81[CHB][hapmap];0.87[CHD][hapmap]

rSNP related genes

Symbol	Regulation type
DYDC1	Proximal transcriptional regulation
DYDC2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
TSPAN14	SCAN
TSPAN14	SCAN