SNP Report
Basic Infomation
| Name | rs6585989 dbSNP |
|---|---|
| Location | chr:10,82174761 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160056 | 0.91[CHB][hapmap] |
| rs10887871 | 1.00[CHB][hapmap] |
| rs10887873 | 1.00[CHB][hapmap] |
| rs11202832 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs14073 | 1.00[CHB][hapmap] |
| rs1538822 | 0.81[CHB][hapmap] |
| rs17105023 | 0.89[CHD][hapmap] |
| rs1870143 | 1.00[CHB][hapmap] |
| rs1870144 | 1.00[CHB][hapmap] |
| rs3195896 | 1.00[CHB][hapmap] |
| rs3195899 | 1.00[CHB][hapmap] |
| rs4934134 | 0.81[CHB][hapmap] |
| rs4934147 | 1.00[CHB][hapmap] |
| rs6585994 | 0.90[CHB][hapmap] |
| rs7071752 | 0.81[CHB][hapmap] |
| rs7074356 | 0.90[CHB][hapmap];0.84[CHD][hapmap] |
| rs7097080 | 0.90[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs7898558 | 1.00[CHB][hapmap];0.82[GIH][hapmap] |
| rs7907224 | 0.86[CEU][hapmap];1.00[CHB][hapmap] |
| rs8735 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | Proximal transcriptional regulation |
| FAM213A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014