SNP Report
Basic Infomation
| Name | rs17105023 dbSNP |
|---|---|
| Location | chr:10,82182339 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509414 | 0.88[CHB][hapmap];1.00[EUR][1000 genomes] |
| rs3802639 | 0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs56758452 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs58082336 | 1.00[EUR][1000 genomes] |
| rs59137417 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59140600 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60262537 | 1.00[EUR][1000 genomes] |
| rs60771270 | 1.00[EUR][1000 genomes] |
| rs6585989 | 0.89[CHD][hapmap] |
| rs7074356 | 0.84[CHD][hapmap] |
| rs7081889 | 0.88[CHB][hapmap] |
| rs7085379 | 1.00[EUR][1000 genomes] |
| rs7092237 | 0.88[CHB][hapmap] |
| rs7093922 | 1.00[EUR][1000 genomes] |
| rs7097080 | 0.94[CHD][hapmap] |
| rs74143116 | 0.95[ASN][1000 genomes] |
| rs74143117 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs74143135 | 1.00[EUR][1000 genomes] |
| rs74143136 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | Distal transcriptional regulation |
| FAM213A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014