SNP Report
Basic Infomation
| Name | rs7097080 dbSNP |
|---|---|
| Location | chr:10,82166700 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160056 | 0.82[CHB][hapmap] |
| rs10887871 | 0.90[CHB][hapmap] |
| rs10887873 | 0.90[CHB][hapmap] |
| rs11202832 | 0.90[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs12411833 | 0.92[CEU][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap] |
| rs12768957 | 0.90[EUR][1000 genomes] |
| rs12770472 | 0.90[EUR][1000 genomes] |
| rs12770500 | 0.90[EUR][1000 genomes] |
| rs14073 | 0.90[CHB][hapmap] |
| rs1538818 | 0.92[CEU][hapmap];0.83[TSI][hapmap] |
| rs1538822 | 0.90[CHB][hapmap] |
| rs17105023 | 0.94[CHD][hapmap] |
| rs17617406 | 1.00[CEU][hapmap];0.88[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs17677908 | 0.84[CEU][hapmap] |
| rs17678338 | 0.92[CEU][hapmap] |
| rs17679603 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs17680103 | 0.92[CEU][hapmap] |
| rs1870143 | 0.90[CHB][hapmap] |
| rs1870144 | 0.90[CHB][hapmap] |
| rs1870146 | 0.92[CEU][hapmap] |
| rs2343302 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2880599 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs3195896 | 0.90[CHB][hapmap] |
| rs3195899 | 0.90[CHB][hapmap] |
| rs34782759 | 0.89[EUR][1000 genomes] |
| rs35436409 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs35671072 | 0.98[EUR][1000 genomes] |
| rs35828718 | 0.90[EUR][1000 genomes] |
| rs4934134 | 0.90[CHB][hapmap] |
| rs4934147 | 0.90[CHB][hapmap] |
| rs6585989 | 0.90[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs6585994 | 1.00[CHB][hapmap] |
| rs7071752 | 0.90[CHB][hapmap] |
| rs7074356 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.91[GIH][hapmap];0.91[EUR][1000 genomes] |
| rs7898558 | 0.90[CHB][hapmap] |
| rs7907224 | 0.90[CHB][hapmap];0.81[CHD][hapmap] |
| rs8735 | 0.90[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | Proximal transcriptional regulation |
| FAM213A | Distal transcriptional regulation |
| TSPAN14 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014