SNP Report

Basic Infomation

Name	rs12411833 dbSNP
Location	chr:10,82103230
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 38)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10749559	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs10788570	0.82[ASN][1000 genomes]
rs10788571	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs10788579	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs10887761	0.84[ASN][1000 genomes]
rs11202652	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs12415730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770472	0.84[EUR][1000 genomes]
rs12770500	0.84[EUR][1000 genomes]
rs1340381	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs1538818	1.00[CEU][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.97[EUR][1000 genomes]
rs17617406	0.92[CEU][hapmap];0.81[TSI][hapmap]
rs17677908	0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rs17678338	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17679603	0.92[CEU][hapmap]
rs17680103	0.83[CEU][hapmap]
rs1870146	0.83[CEU][hapmap]
rs1934697	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs2343302	0.82[EUR][1000 genomes]
rs2880599	0.82[EUR][1000 genomes]
rs35436409	0.82[EUR][1000 genomes]
rs4146515	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs55855057	0.85[EUR][1000 genomes]
rs55899456	0.88[EUR][1000 genomes]
rs55901776	0.84[ASN][1000 genomes]
rs56080607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57342950	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59806247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61859189	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61859191	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859195	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859196	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859197	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859198	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859199	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7074356	0.92[CEU][hapmap];0.85[GIH][hapmap]
rs7097080	0.92[CEU][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap]
rs73301472	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
DYDC2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
TSPAN14	SCAN
POLR3A	SCAN