SNP Report

Basic Infomation

Name	rs17678338 dbSNP
Location	chr:10,82098146
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12411833	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12414521	1.00[YRI][hapmap]
rs12415730	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12770472	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12770500	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12773636	1.00[YRI][hapmap]
rs1538818	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17617406	0.92[CEU][hapmap]
rs17677908	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17679603	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs17680103	1.00[YRI][hapmap]
rs1870146	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs2343302	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2880599	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35436409	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3889823	1.00[YRI][hapmap]
rs55855057	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55899456	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080607	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57342950	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59806247	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859189	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859191	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859195	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859199	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7074356	0.92[CEU][hapmap]
rs7097080	0.92[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
DYDC1	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)