SNP Report
Basic Infomation
| Name | rs2343302 dbSNP |
|---|---|
| Location | chr:10,82163186 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12411833 | 0.82[EUR][1000 genomes] |
| rs12415730 | 0.82[EUR][1000 genomes] |
| rs12768957 | 0.88[EUR][1000 genomes] |
| rs12770472 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12770500 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1417220 | 0.93[ASN][1000 genomes] |
| rs1538818 | 0.84[EUR][1000 genomes] |
| rs17617406 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17678338 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17679603 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2880599 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34782759 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs34894697 | 0.93[ASN][1000 genomes] |
| rs35436409 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35671072 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35828718 | 0.88[EUR][1000 genomes] |
| rs56080607 | 0.82[EUR][1000 genomes] |
| rs57342950 | 0.82[EUR][1000 genomes] |
| rs59806247 | 0.82[EUR][1000 genomes] |
| rs61859189 | 0.82[EUR][1000 genomes] |
| rs61859191 | 0.84[EUR][1000 genomes] |
| rs61859195 | 0.82[EUR][1000 genomes] |
| rs61859196 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61859197 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61859198 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61859199 | 0.84[EUR][1000 genomes] |
| rs7074356 | 0.87[EUR][1000 genomes] |
| rs7097080 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014