SNP Report
Basic Infomation
| Name | rs17617406 dbSNP |
|---|---|
| Location | chr:10,82174556 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12411833 | 0.92[CEU][hapmap];0.81[TSI][hapmap] |
| rs12768957 | 0.93[EUR][1000 genomes] |
| rs12770472 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12770500 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1417220 | 0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs1538818 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[MEX][hapmap];0.85[TSI][hapmap] |
| rs17677908 | 0.84[CEU][hapmap];1.00[CHB][hapmap] |
| rs17678338 | 0.92[CEU][hapmap] |
| rs17679603 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17680103 | 0.92[CEU][hapmap] |
| rs1870146 | 0.92[CEU][hapmap] |
| rs2343302 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2880599 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34782759 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs34894697 | 0.93[ASN][1000 genomes] |
| rs35436409 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35671072 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35828718 | 0.93[EUR][1000 genomes] |
| rs7074356 | 1.00[CEU][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs7097080 | 1.00[CEU][hapmap];0.88[TSI][hapmap];0.98[EUR][1000 genomes] |
| rs878651 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014