SNP Report
Basic Infomation
| Name | rs1870146 dbSNP |
|---|---|
| Location | chr:10,82210379 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10788626 | 1.00[CHB][hapmap] |
| rs10788627 | 1.00[CHB][hapmap] |
| rs10887880 | 1.00[CHB][hapmap] |
| rs10887881 | 1.00[CHB][hapmap] |
| rs10887884 | 1.00[CHB][hapmap] |
| rs10887890 | 1.00[CHB][hapmap] |
| rs10887894 | 1.00[CHB][hapmap] |
| rs10887900 | 1.00[CHB][hapmap] |
| rs10887901 | 1.00[CHB][hapmap] |
| rs10887902 | 1.00[CHB][hapmap] |
| rs10887903 | 1.00[CHB][hapmap] |
| rs10887905 | 1.00[CHB][hapmap] |
| rs10887914 | 1.00[CHB][hapmap] |
| rs11202923 | 1.00[CHB][hapmap] |
| rs11202957 | 1.00[CHB][hapmap] |
| rs11202959 | 1.00[CHB][hapmap] |
| rs11202960 | 1.00[CHB][hapmap] |
| rs11202963 | 1.00[CHB][hapmap] |
| rs12245180 | 1.00[CHB][hapmap] |
| rs12246432 | 1.00[CHB][hapmap] |
| rs12246441 | 1.00[CHB][hapmap] |
| rs12260962 | 1.00[CHB][hapmap] |
| rs12411833 | 0.83[CEU][hapmap] |
| rs12773636 | 1.00[CHB][hapmap];1.00[YRI][hapmap] |
| rs1538818 | 0.83[CEU][hapmap];1.00[YRI][hapmap] |
| rs17617406 | 0.92[CEU][hapmap] |
| rs17618275 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17677908 | 1.00[YRI][hapmap] |
| rs17678338 | 0.83[CEU][hapmap];1.00[YRI][hapmap] |
| rs17679603 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs17680103 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17680741 | 1.00[CHB][hapmap] |
| rs1870147 | 1.00[CHB][hapmap] |
| rs2125040 | 1.00[CHB][hapmap] |
| rs2168721 | 1.00[CHB][hapmap] |
| rs2343550 | 1.00[CHB][hapmap] |
| rs35269135 | 1.00[ASN][1000 genomes] |
| rs4933390 | 1.00[CHB][hapmap] |
| rs4934165 | 1.00[CHB][hapmap] |
| rs4934167 | 1.00[CHB][hapmap] |
| rs4934168 | 1.00[CHB][hapmap] |
| rs4934170 | 1.00[CHB][hapmap] |
| rs7074356 | 0.92[CEU][hapmap] |
| rs7077373 | 1.00[CHB][hapmap] |
| rs7078254 | 1.00[CHB][hapmap] |
| rs7081136 | 1.00[CHB][hapmap] |
| rs7083519 | 1.00[CHB][hapmap] |
| rs7085606 | 1.00[CHB][hapmap] |
| rs7095954 | 1.00[CHB][hapmap] |
| rs7097080 | 0.92[CEU][hapmap] |
| rs7902355 | 1.00[CHB][hapmap] |
| rs878651 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| TSPAN14 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014