SNP Report
Basic Infomation
| Name | rs4934167 dbSNP |
|---|---|
| Location | chr:10,82203506 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 80)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736365 | 0.89[CHD][hapmap] |
| rs10736366 | 0.96[ASN][1000 genomes] |
| rs10788626 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10788627 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10788630 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10788631 | 0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887871 | 0.88[CEU][hapmap] |
| rs10887873 | 0.89[CEU][hapmap] |
| rs10887880 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887881 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887884 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887890 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887891 | 0.96[ASN][1000 genomes] |
| rs10887894 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887895 | 0.88[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10887896 | 0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887898 | 0.88[EUR][1000 genomes] |
| rs10887899 | 0.83[AFR][1000 genomes] |
| rs10887900 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887901 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887902 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887903 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887905 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10887914 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs11202832 | 0.89[CEU][hapmap] |
| rs11202923 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11202929 | 0.83[EUR][1000 genomes] |
| rs11202930 | 0.87[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11202934 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11202935 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11202936 | 0.89[EUR][1000 genomes] |
| rs11202957 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11202959 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11202960 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11202963 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12245180 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12246432 | 1.00[CHB][hapmap] |
| rs12246441 | 1.00[CHB][hapmap] |
| rs12260962 | 1.00[CHB][hapmap] |
| rs12773636 | 1.00[CHB][hapmap] |
| rs1340381 | 0.85[CEU][hapmap] |
| rs14073 | 0.88[CEU][hapmap] |
| rs1538822 | 0.85[CEU][hapmap] |
| rs17680103 | 1.00[CHB][hapmap] |
| rs17680741 | 1.00[CHB][hapmap] |
| rs1870143 | 0.84[CEU][hapmap] |
| rs1870144 | 0.89[CEU][hapmap] |
| rs1870145 | 0.96[CEU][hapmap];0.85[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs1870146 | 1.00[CHB][hapmap] |
| rs1870147 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1934697 | 0.85[CEU][hapmap] |
| rs2125040 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2168721 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2343550 | 1.00[CHB][hapmap] |
| rs3195896 | 0.88[CEU][hapmap] |
| rs3195899 | 0.89[CEU][hapmap] |
| rs4933390 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4934165 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4934168 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4934170 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4934189 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4934192 | 0.86[EUR][1000 genomes] |
| rs55823231 | 0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59028692 | 0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59643748 | 0.93[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7075355 | 1.00[ASN][1000 genomes] |
| rs7077373 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7078254 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7081136 | 1.00[CHB][hapmap] |
| rs7083519 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs7085606 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7086496 | 0.89[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs7088877 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7095954 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7895779 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7902355 | 1.00[CHB][hapmap] |
| rs7917136 | 0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7917145 | 0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8735 | 0.89[CEU][hapmap] |
| rs878651 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000226659 | Distal transcriptional regulation |
| TSPAN14 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014