SNP Report

Basic Infomation

Name	rs4934165 dbSNP
Location	chr:10,82203293
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 74)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10736366	0.96[ASN][1000 genomes]
rs10788626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10788627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10788630	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10788631	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887871	0.88[CEU][hapmap]
rs10887873	0.89[CEU][hapmap]
rs10887880	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887881	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887884	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887890	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887891	0.96[ASN][1000 genomes]
rs10887894	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887895	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10887896	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887898	0.87[EUR][1000 genomes]
rs10887899	0.81[AFR][1000 genomes]
rs10887900	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887901	0.80[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887902	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887903	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887905	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10887914	0.80[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs11202832	0.89[CEU][hapmap]
rs11202923	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202929	0.82[EUR][1000 genomes]
rs11202930	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11202934	0.82[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11202935	0.83[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11202936	0.88[EUR][1000 genomes]
rs11202957	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11202959	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11202960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11202963	1.00[JPT][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12245180	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12246441	1.00[CHB][hapmap]
rs12260962	1.00[CHB][hapmap]
rs1340381	0.85[CEU][hapmap]
rs14073	0.88[CEU][hapmap]
rs1538822	0.85[CEU][hapmap]
rs1870143	0.84[CEU][hapmap]
rs1870144	0.89[CEU][hapmap]
rs1870145	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs1870146	1.00[CHB][hapmap]
rs1870147	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1934697	0.85[CEU][hapmap]
rs2125040	0.80[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2168721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2343550	1.00[CHB][hapmap]
rs3195896	0.84[CEU][hapmap]
rs3195899	0.89[CEU][hapmap]
rs4933390	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4934167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934170	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934189	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4934192	0.85[EUR][1000 genomes]
rs55823231	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59028692	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59643748	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7075355	1.00[ASN][1000 genomes]
rs7077373	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7078254	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7083519	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7085606	0.80[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7086496	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7088877	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7095954	0.80[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7895779	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7902355	1.00[CHB][hapmap]
rs7917136	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7917145	0.82[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8735	0.89[CEU][hapmap]
rs878651	1.00[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000226659	Distal transcriptional regulation
TSPAN14	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)