SNP Report
Basic Infomation
| Name | rs1934697 dbSNP |
|---|---|
| Location | chr:10,82112873 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160056 | 0.87[JPT][hapmap] |
| rs10749559 | 0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10788570 | 0.97[ASN][1000 genomes] |
| rs10788571 | 0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10788579 | 0.93[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10788626 | 0.85[CEU][hapmap] |
| rs10788627 | 0.84[CEU][hapmap] |
| rs10887761 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10887881 | 0.81[CEU][hapmap] |
| rs10887884 | 0.81[CEU][hapmap] |
| rs10887890 | 0.81[CEU][hapmap] |
| rs11202652 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs11202832 | 0.81[CHD][hapmap] |
| rs11202923 | 0.85[CEU][hapmap] |
| rs12411833 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs12415730 | 0.85[ASN][1000 genomes] |
| rs1340381 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1538822 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1870145 | 0.81[CEU][hapmap] |
| rs4146515 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4934081 | 0.91[ASN][1000 genomes] |
| rs4934165 | 0.85[CEU][hapmap] |
| rs4934167 | 0.85[CEU][hapmap] |
| rs4934170 | 0.81[CEU][hapmap] |
| rs55901776 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs56080607 | 0.85[ASN][1000 genomes] |
| rs57342950 | 0.85[ASN][1000 genomes] |
| rs59806247 | 0.84[ASN][1000 genomes] |
| rs61859189 | 0.84[ASN][1000 genomes] |
| rs61859195 | 0.85[ASN][1000 genomes] |
| rs7071752 | 0.81[CHD][hapmap];0.83[GIH][hapmap] |
| rs7086496 | 0.81[CEU][hapmap] |
| rs7909792 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DYDC2 | Proximal transcriptional regulation |
| DYDC1 | RNA binding protein mediated regulation |
| DYDC2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014