SNP Report
Basic Infomation
| Name | rs11202832 dbSNP |
|---|---|
| Location | chr:10,82174949 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 47)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160056 | 0.84[CEU][hapmap];0.91[CHB][hapmap] |
| rs10736365 | 0.89[CEU][hapmap] |
| rs10749559 | 0.80[CEU][hapmap];0.81[CHD][hapmap];0.80[TSI][hapmap] |
| rs10788571 | 0.80[CEU][hapmap];0.81[CHD][hapmap];0.82[TSI][hapmap] |
| rs10788579 | 0.84[CEU][hapmap] |
| rs10788620 | 0.85[EUR][1000 genomes] |
| rs10788625 | 0.85[EUR][1000 genomes] |
| rs10788626 | 0.89[CEU][hapmap] |
| rs10788627 | 0.88[CEU][hapmap] |
| rs10887847 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10887865 | 0.85[EUR][1000 genomes] |
| rs10887871 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes] |
| rs10887873 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs10887880 | 0.96[CEU][hapmap] |
| rs10887881 | 0.85[CEU][hapmap] |
| rs10887884 | 0.85[CEU][hapmap] |
| rs10887890 | 0.85[CEU][hapmap] |
| rs11202652 | 0.83[CEU][hapmap] |
| rs11202815 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11202923 | 0.89[CEU][hapmap] |
| rs12262228 | 0.86[ASN][1000 genomes] |
| rs14073 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes] |
| rs1538822 | 0.81[CHB][hapmap];1.00[CHD][hapmap] |
| rs1870143 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1870144 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs1870145 | 0.85[CEU][hapmap] |
| rs1934697 | 0.81[CHD][hapmap] |
| rs3195896 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes] |
| rs3195899 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes] |
| rs3195900 | 0.81[EUR][1000 genomes] |
| rs4934134 | 0.81[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs4934147 | 1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4934165 | 0.89[CEU][hapmap] |
| rs4934167 | 0.89[CEU][hapmap] |
| rs4934170 | 0.85[CEU][hapmap] |
| rs6585989 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs6585994 | 0.90[CHB][hapmap];0.87[CHD][hapmap] |
| rs7067612 | 0.86[ASN][1000 genomes] |
| rs7071752 | 0.81[CHB][hapmap];1.00[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7074356 | 0.90[CHB][hapmap] |
| rs7081889 | 0.96[CHD][hapmap] |
| rs7088374 | 0.86[ASN][1000 genomes] |
| rs7092237 | 0.96[CHD][hapmap] |
| rs7097080 | 0.90[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs7898558 | 1.00[CHB][hapmap] |
| rs7907224 | 1.00[CHB][hapmap] |
| rs8735 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | Proximal transcriptional regulation |
| FAM213A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014