SNP Report
Basic Infomation
| Name | rs7067612 dbSNP |
|---|---|
| Location | chr:10,82159037 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160056 | 0.84[ASN][1000 genomes] |
| rs11202832 | 0.86[ASN][1000 genomes] |
| rs12253992 | 0.84[ASN][1000 genomes] |
| rs12260866 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12262228 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12262748 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1538822 | 0.85[ASN][1000 genomes] |
| rs1815650 | 0.84[ASN][1000 genomes] |
| rs4146515 | 0.82[EUR][1000 genomes] |
| rs4934134 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6585994 | 0.80[EUR][1000 genomes] |
| rs7071752 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7081889 | 0.82[ASN][1000 genomes] |
| rs7088374 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7088400 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7092237 | 0.82[ASN][1000 genomes] |
| rs7909792 | 0.85[ASN][1000 genomes] |
| rs946890 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM213A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014