SNP Report

Basic Infomation

Name	rs6585994 dbSNP
Location	chr:10,82191643
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160056	0.82[CHB][hapmap]
rs10788620	0.82[ASN][1000 genomes]
rs10887865	0.94[ASN][1000 genomes]
rs10887871	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10887873	0.90[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs11202832	0.90[CHB][hapmap];0.87[CHD][hapmap]
rs12220642	0.96[CEU][hapmap]
rs12220655	0.96[CEU][hapmap]
rs12260866	0.81[EUR][1000 genomes]
rs12262228	0.85[EUR][1000 genomes]
rs12262748	0.82[EUR][1000 genomes]
rs14073	0.90[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1538822	0.90[CHB][hapmap];0.87[CHD][hapmap]
rs1870143	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1870144	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2168721	0.85[CEU][hapmap]
rs3195896	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs3195899	0.90[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs3195900	0.82[ASN][1000 genomes]
rs4146515	0.92[CEU][hapmap]
rs4934134	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[EUR][1000 genomes]
rs4934147	0.90[CHB][hapmap];0.93[JPT][hapmap];0.98[ASN][1000 genomes]
rs6585989	0.90[CHB][hapmap]
rs66586255	0.98[ASN][1000 genomes]
rs7067612	0.80[EUR][1000 genomes]
rs7071752	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.85[EUR][1000 genomes]
rs7074356	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7081889	0.83[CHD][hapmap]
rs7083519	0.85[CEU][hapmap]
rs7088374	0.85[EUR][1000 genomes]
rs7092237	0.83[CHD][hapmap]
rs7096715	0.86[EUR][1000 genomes]
rs7097080	1.00[CHB][hapmap]
rs7898558	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs7898568	0.83[ASN][1000 genomes]
rs7907224	0.90[CHB][hapmap]
rs8735	0.90[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs946890	0.83[EUR][1000 genomes]
rs9787439	0.82[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
TSPAN14	Distal transcriptional regulation
FAM213A	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
C10orf58	Pritchard
RPS24	SCAN
TSPAN14	SCAN
TSPAN14	SCAN