SNP Report
Basic Infomation
| Name | rs12220655 dbSNP |
|---|---|
| Location | chr:10,82219066 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736366 | 0.83[EUR][1000 genomes] |
| rs10788625 | 0.85[ASN][1000 genomes] |
| rs10887891 | 0.81[EUR][1000 genomes] |
| rs10887898 | 0.96[ASN][1000 genomes] |
| rs11202929 | 0.91[ASN][1000 genomes] |
| rs11202936 | 0.81[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs12220642 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1870145 | 0.88[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1902661 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2168721 | 0.89[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs4146515 | 0.88[CEU][hapmap] |
| rs4934134 | 0.96[CEU][hapmap] |
| rs4934192 | 0.90[ASN][1000 genomes] |
| rs6585994 | 0.96[CEU][hapmap] |
| rs7071752 | 0.96[CEU][hapmap] |
| rs7083519 | 0.89[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs7086496 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TSPAN14 | Proximal transcriptional regulation |
| ENSG00000269934 | Distal transcriptional regulation |
| ENSG00000226659 | Distal transcriptional regulation |
| TSPAN14 | Distal transcriptional regulation |
| TSPAN14 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014