SNP Report
Basic Infomation
| Name | rs4146515 dbSNP |
|---|---|
| Location | chr:10,82116602 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10160056 | 0.88[JPT][hapmap] |
| rs10749559 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10788570 | 0.96[ASN][1000 genomes] |
| rs10788571 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10788579 | 0.93[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10887761 | 0.98[ASN][1000 genomes] |
| rs11202652 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs12220642 | 0.88[CEU][hapmap] |
| rs12220655 | 0.88[CEU][hapmap] |
| rs12260866 | 0.83[EUR][1000 genomes] |
| rs12262228 | 0.87[EUR][1000 genomes] |
| rs12262748 | 0.84[EUR][1000 genomes] |
| rs12411833 | 1.00[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs12415730 | 0.84[ASN][1000 genomes] |
| rs1340381 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs1538822 | 0.87[JPT][hapmap] |
| rs1934697 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4934081 | 0.90[ASN][1000 genomes] |
| rs4934134 | 0.92[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs55901776 | 0.98[ASN][1000 genomes] |
| rs56080607 | 0.84[ASN][1000 genomes] |
| rs57342950 | 0.84[ASN][1000 genomes] |
| rs59806247 | 0.83[ASN][1000 genomes] |
| rs61859189 | 0.83[ASN][1000 genomes] |
| rs61859195 | 0.84[ASN][1000 genomes] |
| rs6585994 | 0.92[CEU][hapmap] |
| rs7067612 | 0.82[EUR][1000 genomes] |
| rs7071752 | 0.92[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs7088374 | 0.87[EUR][1000 genomes] |
| rs7088400 | 0.84[EUR][1000 genomes] |
| rs946890 | 0.85[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DYDC1 | Proximal transcriptional regulation |
| DYDC2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014