SNP Report

Basic Infomation

Name	rs1340381 dbSNP
Location	chr:10,82100754
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160056	0.87[JPT][hapmap]
rs10749559	0.85[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10788570	0.98[ASN][1000 genomes]
rs10788571	0.85[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs10788579	0.85[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.99[ASN][1000 genomes]
rs10788626	0.85[CEU][hapmap]
rs10788627	0.84[CEU][hapmap]
rs10887761	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887881	0.81[CEU][hapmap]
rs10887884	0.81[CEU][hapmap]
rs10887890	0.81[CEU][hapmap]
rs11202652	0.85[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11202923	0.85[CEU][hapmap]
rs12411833	0.92[CHB][hapmap];0.84[ASN][1000 genomes]
rs12415730	0.84[ASN][1000 genomes]
rs1538822	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1870145	0.81[CEU][hapmap]
rs1934697	0.94[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4146515	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4934081	0.92[ASN][1000 genomes]
rs4934165	0.85[CEU][hapmap]
rs4934167	0.85[CEU][hapmap]
rs4934170	0.81[CEU][hapmap]
rs55901776	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56080607	0.84[ASN][1000 genomes]
rs57342950	0.84[ASN][1000 genomes]
rs59806247	0.83[ASN][1000 genomes]
rs61859189	0.83[ASN][1000 genomes]
rs61859195	0.84[ASN][1000 genomes]
rs7071752	0.81[GIH][hapmap]
rs7086496	0.81[CEU][hapmap]
rs7909792	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
DYDC2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
TSPAN14	SCAN
TSPAN14	SCAN