SNP Report
Basic Infomation
| Name | rs55901776 dbSNP |
|---|---|
| Location | chr:10,82089493 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10749559 | 0.99[ASN][1000 genomes] |
| rs10788570 | 0.98[ASN][1000 genomes] |
| rs10788571 | 0.99[ASN][1000 genomes] |
| rs10788579 | 0.99[ASN][1000 genomes] |
| rs10887761 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11202652 | 0.99[ASN][1000 genomes] |
| rs12411833 | 0.84[ASN][1000 genomes] |
| rs12415730 | 0.84[ASN][1000 genomes] |
| rs1340381 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1538822 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1934697 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4146515 | 0.98[ASN][1000 genomes] |
| rs4934081 | 0.92[ASN][1000 genomes] |
| rs56080607 | 0.84[ASN][1000 genomes] |
| rs57342950 | 0.84[ASN][1000 genomes] |
| rs59806247 | 0.83[ASN][1000 genomes] |
| rs61859189 | 0.83[ASN][1000 genomes] |
| rs61859195 | 0.84[ASN][1000 genomes] |
| rs7909792 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000235858 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014