SNP Report

Basic Infomation

Name	rs10788579 dbSNP
Location	chr:10,82108610
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 27)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160056	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10749559	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10788570	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10788571	1.00[ASW][hapmap];0.96[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887761	0.99[ASN][1000 genomes]
rs10887871	0.87[CEU][hapmap]
rs10887873	0.84[CEU][hapmap]
rs11202652	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202832	0.84[CEU][hapmap]
rs12411833	0.93[CHB][hapmap];0.83[ASN][1000 genomes]
rs12415730	0.83[ASN][1000 genomes]
rs1340381	0.85[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.99[ASN][1000 genomes]
rs14073	0.84[CEU][hapmap]
rs1870143	0.80[CEU][hapmap]
rs1870144	0.84[CEU][hapmap]
rs1934697	0.93[CHB][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.98[ASN][1000 genomes]
rs3195896	0.82[CEU][hapmap]
rs3195899	0.84[CEU][hapmap]
rs4146515	0.93[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs4934081	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55901776	0.99[ASN][1000 genomes]
rs56080607	0.83[ASN][1000 genomes]
rs57342950	0.83[ASN][1000 genomes]
rs59806247	0.82[ASN][1000 genomes]
rs61859189	0.82[ASN][1000 genomes]
rs61859195	0.83[ASN][1000 genomes]
rs8735	0.84[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
DYDC1	RNA binding protein mediated regulation
DYDC2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)