SNP Report

Basic Infomation

Name	rs1870143 dbSNP
Location	chr:10,82182328
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160056	0.81[CEU][hapmap];0.91[CHB][hapmap]
rs10736365	0.84[CEU][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs10788571	0.84[CEU][hapmap]
rs10788579	0.80[CEU][hapmap]
rs10788619	0.88[EUR][1000 genomes]
rs10788620	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10788625	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10788626	0.84[CEU][hapmap]
rs10788627	0.83[CEU][hapmap]
rs10887847	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10887865	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10887871	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887872	0.84[EUR][1000 genomes]
rs10887873	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10887880	0.92[CEU][hapmap]
rs10887881	0.81[CEU][hapmap]
rs10887884	0.81[CEU][hapmap]
rs10887890	0.81[CEU][hapmap]
rs11202815	0.84[EUR][1000 genomes]
rs11202832	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[MEX][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11202923	0.84[CEU][hapmap]
rs14073	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1538822	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1870144	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1870145	0.81[CEU][hapmap]
rs3195896	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3195899	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3195900	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4934134	0.81[CHB][hapmap]
rs4934147	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4934165	0.84[CEU][hapmap]
rs4934167	0.84[CEU][hapmap]
rs4934170	0.81[CEU][hapmap]
rs6585989	1.00[CHB][hapmap]
rs6585994	0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs66586255	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071752	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs7074356	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs7081889	0.83[CHD][hapmap]
rs7092237	0.83[CHD][hapmap]
rs7097080	0.90[CHB][hapmap]
rs7898558	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs7898568	0.84[ASN][1000 genomes]
rs7907224	1.00[CHB][hapmap]
rs8735	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
FAM213A	Distal transcriptional regulation
FAM213A	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
TSPAN14	SCAN
ANXA11	SCAN
TSPAN14	SCAN