SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160056	0.91[CHB][hapmap]
rs10887865	0.80[ASN][1000 genomes]
rs10887871	1.00[CHB][hapmap]
rs10887873	1.00[CHB][hapmap]
rs11202832	1.00[CHB][hapmap]
rs14073	1.00[CHB][hapmap]
rs1417220	0.93[TSI][hapmap]
rs1538822	0.81[CHB][hapmap]
rs17102596	0.80[CEU][hapmap]
rs1832683	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs1870143	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs1870144	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs3195896	1.00[CHB][hapmap]
rs3195899	1.00[CHB][hapmap]
rs4934134	0.81[CHB][hapmap]
rs4934147	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs6585989	1.00[CHB][hapmap];0.82[GIH][hapmap]
rs6585994	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs66586255	0.84[ASN][1000 genomes]
rs7071752	0.81[CHB][hapmap]
rs7074356	0.90[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7087728	0.80[CEU][hapmap];0.82[TSI][hapmap]
rs7097080	0.90[CHB][hapmap]
rs7898568	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907224	1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs8735	1.00[CHB][hapmap];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
FAM213A	Distal transcriptional regulation
FAM213A	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)