SNP Report
Basic Infomation
| Name | rs1832683 dbSNP |
|---|---|
| Location | chr:10,82032331 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 56)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10466226 | 1.00[JPT][hapmap] |
| rs10466228 | 1.00[JPT][hapmap] |
| rs1046707 | 0.84[ASN][1000 genomes] |
| rs11201966 | 1.00[JPT][hapmap] |
| rs11201972 | 1.00[JPT][hapmap] |
| rs12256429 | 1.00[JPT][hapmap] |
| rs12268619 | 1.00[JPT][hapmap] |
| rs12412762 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs12414332 | 0.84[ASN][1000 genomes] |
| rs12414521 | 1.00[JPT][hapmap] |
| rs12763392 | 1.00[JPT][hapmap] |
| rs12769115 | 1.00[JPT][hapmap] |
| rs12779955 | 1.00[JPT][hapmap] |
| rs1417220 | 0.83[CEU][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap] |
| rs17098720 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs17100316 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs17102596 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17606361 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1985908 | 1.00[CHB][hapmap] |
| rs2304410 | 1.00[JPT][hapmap] |
| rs28538009 | 1.00[ASN][1000 genomes] |
| rs28539411 | 1.00[ASN][1000 genomes] |
| rs28539798 | 1.00[ASN][1000 genomes] |
| rs28550367 | 1.00[ASN][1000 genomes] |
| rs35014047 | 0.84[ASN][1000 genomes] |
| rs35395602 | 0.84[ASN][1000 genomes] |
| rs36023925 | 0.84[ASN][1000 genomes] |
| rs3851055 | 1.00[JPT][hapmap] |
| rs3889823 | 1.00[JPT][hapmap] |
| rs4436490 | 0.84[ASN][1000 genomes] |
| rs55855057 | 0.92[ASN][1000 genomes] |
| rs56140719 | 0.84[ASN][1000 genomes] |
| rs56196124 | 0.84[ASN][1000 genomes] |
| rs56235549 | 0.84[ASN][1000 genomes] |
| rs56271768 | 0.84[ASN][1000 genomes] |
| rs56317427 | 0.84[ASN][1000 genomes] |
| rs57257258 | 0.84[ASN][1000 genomes] |
| rs61859012 | 0.84[ASN][1000 genomes] |
| rs61859013 | 0.84[ASN][1000 genomes] |
| rs61859014 | 0.84[ASN][1000 genomes] |
| rs61859016 | 0.84[ASN][1000 genomes] |
| rs61859022 | 0.84[ASN][1000 genomes] |
| rs61859977 | 0.84[ASN][1000 genomes] |
| rs61859979 | 1.00[ASN][1000 genomes] |
| rs61859980 | 0.92[ASN][1000 genomes] |
| rs6585424 | 1.00[JPT][hapmap] |
| rs6585454 | 1.00[JPT][hapmap] |
| rs66622864 | 1.00[ASN][1000 genomes] |
| rs7080405 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs7087728 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs728615 | 0.84[ASN][1000 genomes] |
| rs728616 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs73297466 | 0.92[ASN][1000 genomes] |
| rs7893241 | 1.00[JPT][hapmap] |
| rs7898558 | 0.80[CEU][hapmap];0.82[TSI][hapmap] |
| rs7907311 | 1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAT1A | Proximal transcriptional regulation |
| MAT1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014