SNP Report
Basic Infomation
| Name | rs56317427 dbSNP |
|---|---|
| Location | chr:10,81861934 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 82)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046707 | 1.00[ASN][1000 genomes] |
| rs1051246 | 0.82[ASN][1000 genomes] |
| rs12411407 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12411479 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12412762 | 1.00[ASN][1000 genomes] |
| rs12412999 | 0.91[ASN][1000 genomes] |
| rs12413653 | 0.82[ASN][1000 genomes] |
| rs12413682 | 0.82[ASN][1000 genomes] |
| rs12414096 | 0.82[ASN][1000 genomes] |
| rs12414332 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12415083 | 0.82[ASN][1000 genomes] |
| rs12416060 | 0.82[ASN][1000 genomes] |
| rs12416068 | 0.82[ASN][1000 genomes] |
| rs12416075 | 0.82[ASN][1000 genomes] |
| rs12416493 | 0.82[ASN][1000 genomes] |
| rs12768613 | 0.82[ASN][1000 genomes] |
| rs12769764 | 0.82[ASN][1000 genomes] |
| rs12779139 | 0.82[ASN][1000 genomes] |
| rs1537835 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17098720 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17100316 | 1.00[ASN][1000 genomes] |
| rs17102596 | 0.84[ASN][1000 genomes] |
| rs17606361 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17879726 | 0.82[ASN][1000 genomes] |
| rs17880086 | 0.82[ASN][1000 genomes] |
| rs17886630 | 0.82[ASN][1000 genomes] |
| rs1832683 | 0.84[ASN][1000 genomes] |
| rs1923534 | 0.82[ASN][1000 genomes] |
| rs28538009 | 0.84[ASN][1000 genomes] |
| rs28539411 | 0.84[ASN][1000 genomes] |
| rs28539798 | 0.84[ASN][1000 genomes] |
| rs28550367 | 0.84[ASN][1000 genomes] |
| rs3088308 | 0.82[ASN][1000 genomes] |
| rs34816332 | 0.84[ASN][1000 genomes] |
| rs35014047 | 1.00[ASN][1000 genomes] |
| rs35395602 | 1.00[ASN][1000 genomes] |
| rs35420115 | 0.92[ASN][1000 genomes] |
| rs36023925 | 1.00[ASN][1000 genomes] |
| rs36073865 | 0.82[ASN][1000 genomes] |
| rs4387301 | 0.82[ASN][1000 genomes] |
| rs4436490 | 1.00[ASN][1000 genomes] |
| rs4520539 | 0.82[ASN][1000 genomes] |
| rs55835350 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55855057 | 0.92[ASN][1000 genomes] |
| rs56122289 | 0.82[ASN][1000 genomes] |
| rs56140719 | 1.00[ASN][1000 genomes] |
| rs56196124 | 1.00[ASN][1000 genomes] |
| rs56235549 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56271768 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56354422 | 1.00[ASN][1000 genomes] |
| rs57257258 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61858980 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859008 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859012 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859013 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859014 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859016 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859022 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859977 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859979 | 0.84[ASN][1000 genomes] |
| rs61859980 | 0.92[ASN][1000 genomes] |
| rs61860016 | 0.82[ASN][1000 genomes] |
| rs61860417 | 0.82[ASN][1000 genomes] |
| rs61860420 | 0.82[ASN][1000 genomes] |
| rs61860423 | 0.82[ASN][1000 genomes] |
| rs61860424 | 0.82[ASN][1000 genomes] |
| rs66622864 | 0.84[ASN][1000 genomes] |
| rs7080405 | 1.00[ASN][1000 genomes] |
| rs7083964 | 0.84[ASN][1000 genomes] |
| rs7086876 | 0.82[ASN][1000 genomes] |
| rs7087728 | 0.84[ASN][1000 genomes] |
| rs7091280 | 0.82[ASN][1000 genomes] |
| rs7091430 | 0.82[ASN][1000 genomes] |
| rs723191 | 0.82[ASN][1000 genomes] |
| rs723193 | 0.82[ASN][1000 genomes] |
| rs726289 | 0.82[ASN][1000 genomes] |
| rs728615 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs728616 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73297466 | 0.92[ASN][1000 genomes] |
| rs7902075 | 0.84[ASN][1000 genomes] |
| rs7906286 | 0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7907311 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM254 | Distal transcriptional regulation |
| TMEM254-AS1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014