SNP Report

Basic Infomation

Name	rs12411407 dbSNP
Location	chr:10,81828231
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 108)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046707	1.00[ASN][1000 genomes]
rs1051246	0.82[ASN][1000 genomes]
rs1054054	1.00[CEU][hapmap]
rs10788319	1.00[CEU][hapmap]
rs10887199	1.00[CEU][hapmap]
rs10887215	1.00[CEU][hapmap]
rs10887218	1.00[CEU][hapmap]
rs11200859	1.00[CEU][hapmap]
rs12245076	1.00[CEU][hapmap]
rs12253608	1.00[CEU][hapmap]
rs12411479	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12412762	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12412999	0.91[ASN][1000 genomes]
rs12413653	0.82[ASN][1000 genomes]
rs12413678	0.85[CEU][hapmap]
rs12413682	0.82[ASN][1000 genomes]
rs12413715	1.00[CEU][hapmap]
rs12414096	0.82[ASN][1000 genomes]
rs12414332	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414521	1.00[CEU][hapmap]
rs12414616	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12414891	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12415083	0.82[ASN][1000 genomes]
rs12415523	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs12416060	0.82[ASN][1000 genomes]
rs12416068	0.82[ASN][1000 genomes]
rs12416075	0.82[ASN][1000 genomes]
rs12416493	0.82[ASN][1000 genomes]
rs12768613	0.82[ASN][1000 genomes]
rs12769764	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs12779139	0.82[ASN][1000 genomes]
rs1537835	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098720	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17100316	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs17606361	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17879726	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17880086	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17881828	0.81[AMR][1000 genomes]
rs17883671	0.81[AMR][1000 genomes]
rs17884637	0.81[AMR][1000 genomes]
rs17885031	0.81[AMR][1000 genomes]
rs17886630	0.82[ASN][1000 genomes]
rs1885549	1.00[CEU][hapmap]
rs1885551	1.00[CEU][hapmap]
rs1885552	1.00[CEU][hapmap]
rs1923534	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs1983775	1.00[CEU][hapmap]
rs1983776	1.00[CEU][hapmap]
rs1998374	1.00[CEU][hapmap]
rs2181204	1.00[CEU][hapmap]
rs28538009	0.84[ASN][1000 genomes]
rs28539411	0.84[ASN][1000 genomes]
rs28539798	0.84[ASN][1000 genomes]
rs28550367	0.84[ASN][1000 genomes]
rs3088308	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34816332	0.84[ASN][1000 genomes]
rs35014047	1.00[ASN][1000 genomes]
rs35395602	1.00[ASN][1000 genomes]
rs35420115	0.92[ASN][1000 genomes]
rs36023925	1.00[ASN][1000 genomes]
rs36073865	0.82[ASN][1000 genomes]
rs3862518	1.00[CEU][hapmap]
rs3889823	1.00[CEU][hapmap]
rs4387301	0.82[ASN][1000 genomes]
rs4436490	1.00[ASN][1000 genomes]
rs4520539	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs55835350	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56122289	0.82[ASN][1000 genomes]
rs56140719	1.00[ASN][1000 genomes]
rs56196124	1.00[ASN][1000 genomes]
rs56235549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56271768	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56317427	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56354422	1.00[ASN][1000 genomes]
rs57257258	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858980	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859012	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859013	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859014	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859016	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859022	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859977	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859979	0.84[ASN][1000 genomes]
rs61859980	0.92[ASN][1000 genomes]
rs61860016	0.82[ASN][1000 genomes]
rs61860417	0.82[ASN][1000 genomes]
rs61860420	0.82[ASN][1000 genomes]
rs61860423	0.82[ASN][1000 genomes]
rs61860424	0.82[ASN][1000 genomes]
rs66622864	0.84[ASN][1000 genomes]
rs7080405	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs7083964	0.84[ASN][1000 genomes]
rs7086876	0.82[ASN][1000 genomes]
rs7091280	0.82[ASN][1000 genomes]
rs7091430	0.82[ASN][1000 genomes]
rs723191	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs723193	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs726014	1.00[CEU][hapmap]
rs726289	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs728615	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728616	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73297466	0.92[ASN][1000 genomes]
rs7893241	1.00[CEU][hapmap]
rs7902075	0.84[ASN][1000 genomes]
rs7906286	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7907311	1.00[ASN][1000 genomes]
rs958865	1.00[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
TMEM254	Distal transcriptional regulation
TMEM254-AS1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)