SNP Report

Basic Infomation

Name	rs61860417 dbSNP
Location	chr:10,81734727
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 85)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046707	0.82[ASN][1000 genomes]
rs1051246	1.00[ASN][1000 genomes]
rs1054054	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12411407	0.82[ASN][1000 genomes]
rs12411479	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12412226	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12412762	0.82[ASN][1000 genomes]
rs12413653	1.00[ASN][1000 genomes]
rs12413678	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12413682	1.00[ASN][1000 genomes]
rs12413715	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12414096	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414332	0.82[ASN][1000 genomes]
rs12414616	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12414891	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12415083	1.00[ASN][1000 genomes]
rs12415523	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12416060	1.00[ASN][1000 genomes]
rs12416068	1.00[ASN][1000 genomes]
rs12416075	1.00[ASN][1000 genomes]
rs12416493	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1537835	0.82[ASN][1000 genomes]
rs17098720	0.82[ASN][1000 genomes]
rs17606361	0.82[ASN][1000 genomes]
rs17879726	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17880086	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17881828	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17883671	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17884637	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17885031	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17886286	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17886630	1.00[ASN][1000 genomes]
rs1923534	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983775	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1983776	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2025197	0.82[ASN][1000 genomes]
rs3088308	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35395602	0.82[ASN][1000 genomes]
rs36023925	0.82[ASN][1000 genomes]
rs41298231	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41309986	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4387301	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4436490	0.82[ASN][1000 genomes]
rs4520539	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45558131	0.82[ASN][1000 genomes]
rs55835350	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55836366	0.82[ASN][1000 genomes]
rs56122289	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140719	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56196124	0.82[ASN][1000 genomes]
rs56198874	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56235549	0.82[ASN][1000 genomes]
rs56271768	0.82[ASN][1000 genomes]
rs56317427	0.82[ASN][1000 genomes]
rs56354422	0.82[ASN][1000 genomes]
rs57257258	0.82[ASN][1000 genomes]
rs61858980	0.82[ASN][1000 genomes]
rs61859008	0.82[ASN][1000 genomes]
rs61859012	0.82[ASN][1000 genomes]
rs61859013	0.82[ASN][1000 genomes]
rs61859014	0.82[ASN][1000 genomes]
rs61859016	0.82[ASN][1000 genomes]
rs61859022	0.82[ASN][1000 genomes]
rs61859762	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859763	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859766	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61859793	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61859977	0.82[ASN][1000 genomes]
rs61860416	0.83[AMR][1000 genomes]
rs61860420	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860421	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61860423	1.00[ASN][1000 genomes]
rs61860424	1.00[ASN][1000 genomes]
rs7080405	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7086876	1.00[ASN][1000 genomes]
rs7091280	1.00[ASN][1000 genomes]
rs7091430	1.00[ASN][1000 genomes]
rs723191	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723193	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726289	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728615	0.82[ASN][1000 genomes]
rs728616	0.82[ASN][1000 genomes]
rs7902075	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7906286	0.82[ASN][1000 genomes]
rs7907311	0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000235924	Distal transcriptional regulation
SFTPD	Distal transcriptional regulation
ENSG00000225100	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)