SNP Report

Basic Infomation

Name	rs12412226 dbSNP
Location	chr:10,81735288
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1051246	0.84[ASN][1000 genomes]
rs1054054	0.86[AMR][1000 genomes]
rs11201014	0.83[AMR][1000 genomes]
rs11201025	0.83[AMR][1000 genomes]
rs12411479	0.85[AMR][1000 genomes]
rs12413653	0.84[ASN][1000 genomes]
rs12413678	0.85[AMR][1000 genomes]
rs12413682	0.84[ASN][1000 genomes]
rs12413715	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12414096	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12414616	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12414891	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12415083	0.84[ASN][1000 genomes]
rs12415523	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12416060	0.84[ASN][1000 genomes]
rs12416068	0.84[ASN][1000 genomes]
rs12416075	0.84[ASN][1000 genomes]
rs12416493	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17879726	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17880086	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17881828	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17883671	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17884637	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17885031	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17886286	0.90[EUR][1000 genomes]
rs17886630	0.84[ASN][1000 genomes]
rs1923534	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1983775	0.83[EUR][1000 genomes]
rs1983776	0.83[EUR][1000 genomes]
rs3088308	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3934643	0.83[AMR][1000 genomes]
rs41298231	0.86[AMR][1000 genomes]
rs41309986	0.86[AMR][1000 genomes]
rs4387301	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4520539	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55835350	0.85[AMR][1000 genomes]
rs56122289	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56198874	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61859762	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61859763	0.81[EUR][1000 genomes]
rs61859766	0.86[AMR][1000 genomes]
rs61859793	0.84[AMR][1000 genomes]
rs61860416	0.80[AMR][1000 genomes]
rs61860417	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61860420	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61860421	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61860423	0.84[ASN][1000 genomes]
rs61860424	0.84[ASN][1000 genomes]
rs7086876	0.84[ASN][1000 genomes]
rs7091280	0.84[ASN][1000 genomes]
rs7091430	0.84[ASN][1000 genomes]
rs723191	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs723193	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs726289	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7902075	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000235924	Distal transcriptional regulation
SFTPD	Distal transcriptional regulation
ENSG00000225100	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)