SNP Report

Basic Infomation

Name	rs1054054 dbSNP
Location	chr:10,81682728
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 89)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1051246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10788319	1.00[CEU][hapmap]
rs10887199	1.00[CEU][hapmap]
rs10887215	1.00[CEU][hapmap]
rs10887218	1.00[CEU][hapmap]
rs11199111	0.92[ASN][1000 genomes]
rs11199535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11200145	0.92[ASN][1000 genomes]
rs11200859	1.00[CEU][hapmap]
rs12245076	1.00[CEU][hapmap]
rs12253608	1.00[CEU][hapmap]
rs12411407	1.00[CEU][hapmap]
rs12412226	0.86[AMR][1000 genomes]
rs12413653	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12413678	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12413682	0.82[ASN][1000 genomes]
rs12413715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414096	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12414616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415083	0.82[ASN][1000 genomes]
rs12415523	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12416060	0.82[ASN][1000 genomes]
rs12416068	0.82[ASN][1000 genomes]
rs12416075	0.82[ASN][1000 genomes]
rs12416493	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1537835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17098720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17606361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17879726	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17880086	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17881828	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17883671	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17884637	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17885031	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17886286	0.88[EUR][1000 genomes]
rs17886630	0.82[ASN][1000 genomes]
rs1885549	1.00[CEU][hapmap]
rs1885551	1.00[CEU][hapmap]
rs1885552	1.00[CEU][hapmap]
rs1923534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1983775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1983776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998374	1.00[CEU][hapmap]
rs2025197	1.00[ASN][1000 genomes]
rs2181204	1.00[CEU][hapmap]
rs3088308	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34572672	0.84[ASN][1000 genomes]
rs41298231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41309986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342971	0.84[ASN][1000 genomes]
rs4387301	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4520539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4522114	0.92[ASN][1000 genomes]
rs45558131	1.00[ASN][1000 genomes]
rs55665833	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55729226	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs55836366	1.00[ASN][1000 genomes]
rs56122289	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56198874	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859762	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859763	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859766	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859793	1.00[ASN][1000 genomes]
rs61860417	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61860420	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61860421	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61860423	0.82[ASN][1000 genomes]
rs61860424	0.82[ASN][1000 genomes]
rs7072068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7072441	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7079303	0.84[ASN][1000 genomes]
rs7082500	0.84[ASN][1000 genomes]
rs7083964	1.00[JPT][hapmap]
rs7086876	0.82[ASN][1000 genomes]
rs7091280	0.82[ASN][1000 genomes]
rs7091430	0.82[ASN][1000 genomes]
rs7092802	0.84[ASN][1000 genomes]
rs723191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs723193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs726014	1.00[CEU][hapmap]
rs726289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs728616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7901746	0.84[ASN][1000 genomes]
rs7902075	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7907311	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7908551	0.92[ASN][1000 genomes]
rs7924262	0.84[ASN][1000 genomes]
rs958865	1.00[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
MBL1P	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)