SNP Report
Basic Infomation
| Name | rs55729226 dbSNP |
|---|---|
| Location | chr:10,89129566 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1054054 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11199111 | 0.83[ASN][1000 genomes] |
| rs11199535 | 0.83[ASN][1000 genomes] |
| rs11200145 | 0.83[ASN][1000 genomes] |
| rs12413678 | 0.91[ASN][1000 genomes] |
| rs12413715 | 0.91[ASN][1000 genomes] |
| rs12414616 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12414891 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12415523 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17879726 | 0.80[AMR][1000 genomes] |
| rs17880086 | 0.80[AMR][1000 genomes] |
| rs17881828 | 0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17883671 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17884637 | 0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs17885031 | 0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1983775 | 0.91[ASN][1000 genomes] |
| rs1983776 | 0.91[ASN][1000 genomes] |
| rs2025197 | 0.91[ASN][1000 genomes] |
| rs3088308 | 0.80[AMR][1000 genomes] |
| rs41298231 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs41309986 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4522114 | 0.83[ASN][1000 genomes] |
| rs45558131 | 0.91[ASN][1000 genomes] |
| rs55665833 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55836366 | 0.91[ASN][1000 genomes] |
| rs56198874 | 0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs61859762 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs61859763 | 0.91[ASN][1000 genomes] |
| rs61859766 | 0.80[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs61859793 | 0.91[ASN][1000 genomes] |
| rs61862761 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs61862762 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs61862763 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7908551 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM22D | Proximal transcriptional regulation |
| FAM22D | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014