SNP Report
Basic Infomation
| Name | rs3088308 dbSNP |
|---|---|
| Location | chr:10,81697868 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 97)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046707 | 0.82[ASN][1000 genomes] |
| rs1051246 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs1054054 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10788319 | 1.00[CEU][hapmap] |
| rs10887199 | 1.00[CEU][hapmap] |
| rs10887215 | 1.00[CEU][hapmap] |
| rs10887218 | 1.00[CEU][hapmap] |
| rs11199535 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11200859 | 1.00[CEU][hapmap] |
| rs12245076 | 1.00[CEU][hapmap] |
| rs12253608 | 1.00[CEU][hapmap] |
| rs12411407 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12411479 | 0.87[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12412226 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12413653 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs12413678 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12413682 | 1.00[ASN][1000 genomes] |
| rs12413715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12414096 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12414332 | 0.82[ASN][1000 genomes] |
| rs12414616 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12414891 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12415083 | 1.00[ASN][1000 genomes] |
| rs12415523 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12416060 | 1.00[ASN][1000 genomes] |
| rs12416068 | 1.00[ASN][1000 genomes] |
| rs12416075 | 1.00[ASN][1000 genomes] |
| rs12416493 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1537835 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17098720 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17606361 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs17879726 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17880086 | 1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17881828 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17883671 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17884637 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17885031 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17886286 | 0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs17886630 | 1.00[ASN][1000 genomes] |
| rs1885549 | 1.00[CEU][hapmap] |
| rs1885551 | 1.00[CEU][hapmap] |
| rs1885552 | 1.00[CEU][hapmap] |
| rs1923534 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1983775 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1983776 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1998374 | 1.00[CEU][hapmap] |
| rs2025197 | 0.82[ASN][1000 genomes] |
| rs2181204 | 1.00[CEU][hapmap] |
| rs41298231 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs41309986 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4387301 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4436490 | 0.82[ASN][1000 genomes] |
| rs4520539 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs45558131 | 0.82[ASN][1000 genomes] |
| rs55665833 | 0.84[AMR][1000 genomes] |
| rs55729226 | 0.80[AMR][1000 genomes] |
| rs55835350 | 0.87[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs55836366 | 0.82[ASN][1000 genomes] |
| rs56122289 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56198874 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs56235549 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs56271768 | 0.82[ASN][1000 genomes] |
| rs56317427 | 0.82[ASN][1000 genomes] |
| rs56354422 | 0.82[ASN][1000 genomes] |
| rs57257258 | 0.82[ASN][1000 genomes] |
| rs61858980 | 0.82[ASN][1000 genomes] |
| rs61859008 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61859012 | 0.82[ASN][1000 genomes] |
| rs61859013 | 0.82[ASN][1000 genomes] |
| rs61859014 | 0.82[ASN][1000 genomes] |
| rs61859016 | 0.82[ASN][1000 genomes] |
| rs61859022 | 0.82[ASN][1000 genomes] |
| rs61859762 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61859763 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61859766 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61859793 | 0.86[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61860417 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860420 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860421 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs61860423 | 1.00[ASN][1000 genomes] |
| rs61860424 | 1.00[ASN][1000 genomes] |
| rs7072068 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7072441 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7083964 | 1.00[JPT][hapmap] |
| rs7086876 | 1.00[ASN][1000 genomes] |
| rs7091280 | 1.00[ASN][1000 genomes] |
| rs7091430 | 1.00[ASN][1000 genomes] |
| rs723191 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs723193 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs726014 | 1.00[CEU][hapmap] |
| rs726289 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs728615 | 0.82[ASN][1000 genomes] |
| rs728616 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs7902075 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7906286 | 0.82[ASN][1000 genomes] |
| rs7907311 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs958865 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SFTPD | Distal transcriptional regulation |
| MBL1P | RNA binding protein mediated regulation |
| SFTPD | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014