SNP Report

Basic Infomation

Name	rs12253608 dbSNP
Location	chr:10,81712483
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 50)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1054054	1.00[CEU][hapmap]
rs10788319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10887199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10887215	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10887218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10887226	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs11200859	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11200982	0.89[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap]
rs11200984	0.89[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap]
rs11200985	0.89[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap]
rs11201000	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs11201012	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12219080	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs12245076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12264259	0.89[CHB][hapmap];0.82[JPT][hapmap]
rs12411407	1.00[CEU][hapmap]
rs12412762	1.00[CEU][hapmap]
rs12413715	1.00[CEU][hapmap]
rs12414616	1.00[CEU][hapmap]
rs12414891	1.00[CEU][hapmap]
rs12415523	1.00[CEU][hapmap]
rs1537835	1.00[CEU][hapmap]
rs17098720	1.00[CEU][hapmap]
rs17606361	1.00[CEU][hapmap]
rs1885549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1885551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1885552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1923534	1.00[CEU][hapmap]
rs1983775	1.00[CEU][hapmap]
rs1983776	1.00[CEU][hapmap]
rs1998374	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2181204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2181205	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs3088308	1.00[CEU][hapmap]
rs3793925	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs3923564	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4335481	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap]
rs4369337	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4466773	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs4520539	1.00[CEU][hapmap]
rs6413523	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7080405	1.00[CEU][hapmap]
rs723191	1.00[CEU][hapmap]
rs723192	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs723193	1.00[CEU][hapmap]
rs726014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs726289	1.00[CEU][hapmap]
rs728616	1.00[CEU][hapmap]
rs911886	0.85[CHB][hapmap]
rs958865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SFTPD	Proximal transcriptional regulation
SFTPD	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)