SNP Report
Basic Infomation
| Name | rs11200985 dbSNP |
|---|---|
| Location | chr:10,81732653 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 60)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10788319 | 0.90[CHB][hapmap];0.82[JPT][hapmap];0.90[YRI][hapmap];0.87[ASN][1000 genomes] |
| rs10788321 | 0.87[ASN][1000 genomes] |
| rs10887199 | 0.90[CHB][hapmap];0.91[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs10887215 | 0.84[CHB][hapmap];0.83[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs10887218 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs10887226 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10887229 | 0.87[ASN][1000 genomes] |
| rs10887294 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11200859 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.87[ASN][1000 genomes] |
| rs11200971 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11200972 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11200974 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11200977 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11200979 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11200980 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11200982 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11200984 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201000 | 1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201012 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201014 | 0.92[ASN][1000 genomes] |
| rs11201025 | 0.92[ASN][1000 genomes] |
| rs12218540 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12219080 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12240866 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12243433 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12243538 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12245076 | 0.94[CHB][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.87[ASN][1000 genomes] |
| rs12245535 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12253608 | 0.89[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap] |
| rs12259355 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12264259 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12264378 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17884887 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1885549 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs1885551 | 0.82[ASW][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.90[MKK][hapmap];0.91[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs1885552 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs1998374 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2181204 | 0.90[CHB][hapmap];0.88[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs2181205 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28715525 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3793925 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3923564 | 1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3934643 | 0.92[ASN][1000 genomes] |
| rs4325265 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4335481 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4369337 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4379774 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4442488 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4466773 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4466774 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59169164 | 0.86[ASN][1000 genomes] |
| rs61858841 | 0.87[ASN][1000 genomes] |
| rs61860416 | 0.86[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6413523 | 1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs723192 | 0.90[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs726014 | 0.90[CHB][hapmap];0.93[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs726288 | 1.00[EUR][1000 genomes] |
| rs911886 | 0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs958865 | 0.95[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs9651447 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000235924 | Distal transcriptional regulation |
| SFTPD | Distal transcriptional regulation |
| ENSG00000225100 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014