SNP Report
Basic Infomation
| Name | rs12259355 dbSNP |
|---|---|
| Location | chr:10,81744848 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 36)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10887226 | 0.83[ASN][1000 genomes] |
| rs10887294 | 0.90[ASN][1000 genomes] |
| rs10887297 | 0.83[ASN][1000 genomes] |
| rs11200971 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11200974 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11200977 | 0.85[AFR][1000 genomes] |
| rs11200979 | 0.82[AFR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11200980 | 0.85[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11200982 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11200984 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11200985 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11201000 | 0.87[ASN][1000 genomes] |
| rs11201012 | 0.87[ASN][1000 genomes] |
| rs11201014 | 0.80[ASN][1000 genomes] |
| rs11201025 | 0.81[ASN][1000 genomes] |
| rs12218540 | 0.87[ASN][1000 genomes] |
| rs12219080 | 0.81[ASN][1000 genomes] |
| rs12240866 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12243433 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12243538 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12245535 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12264259 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12264378 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs28715525 | 0.87[ASN][1000 genomes] |
| rs3923564 | 0.87[ASN][1000 genomes] |
| rs3934643 | 0.80[ASN][1000 genomes] |
| rs4325265 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4335481 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4369337 | 0.91[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs4379774 | 0.87[ASN][1000 genomes] |
| rs4442488 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4466773 | 0.91[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4466774 | 0.87[AFR][1000 genomes];0.87[ASN][1000 genomes] |
| rs61860416 | 0.80[ASN][1000 genomes] |
| rs6413523 | 0.81[ASN][1000 genomes] |
| rs9651447 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SFTPD | Proximal transcriptional regulation |
| ENSG00000225100 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014