SNP Report

Basic Infomation

Name	rs61858841 dbSNP
Location	chr:10,81714176
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 56)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10788319	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10788321	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887199	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10887215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10887218	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10887226	0.91[ASN][1000 genomes]
rs10887229	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887297	0.82[ASN][1000 genomes]
rs11200859	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11200971	0.87[ASN][1000 genomes]
rs11200974	0.87[ASN][1000 genomes]
rs11200979	0.81[ASN][1000 genomes]
rs11200980	0.83[ASN][1000 genomes]
rs11200982	0.87[ASN][1000 genomes]
rs11200984	0.87[ASN][1000 genomes]
rs11200985	0.87[ASN][1000 genomes]
rs11201000	0.87[ASN][1000 genomes]
rs11201012	0.87[ASN][1000 genomes]
rs11201014	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11201025	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12218540	0.87[ASN][1000 genomes]
rs12219080	0.90[ASN][1000 genomes]
rs12240866	0.87[ASN][1000 genomes]
rs12243433	0.87[ASN][1000 genomes]
rs12243538	0.87[ASN][1000 genomes]
rs12245076	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12245535	0.87[ASN][1000 genomes]
rs12264259	0.87[ASN][1000 genomes]
rs12264378	0.87[ASN][1000 genomes]
rs12414096	0.80[AMR][1000 genomes]
rs17884887	0.88[ASN][1000 genomes]
rs1885549	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1885551	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1885552	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923534	0.80[AMR][1000 genomes]
rs1998374	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2181204	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2181205	0.88[ASN][1000 genomes]
rs28715525	0.87[ASN][1000 genomes]
rs3793925	0.88[ASN][1000 genomes]
rs3923564	0.87[ASN][1000 genomes]
rs3934643	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4325265	0.87[ASN][1000 genomes]
rs4335481	0.87[ASN][1000 genomes]
rs4369337	0.86[ASN][1000 genomes]
rs4379774	0.87[ASN][1000 genomes]
rs4442488	0.87[ASN][1000 genomes]
rs4466773	0.87[ASN][1000 genomes]
rs4466774	0.87[ASN][1000 genomes]
rs59169164	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61860416	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6413523	0.89[ASN][1000 genomes]
rs723192	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs726014	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs958865	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9651447	0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SFTPD	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)