SNP Report
Basic Infomation
| Name | rs56140719 dbSNP |
|---|---|
| Location | chr:10,81902245 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 100)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046707 | 1.00[ASN][1000 genomes] |
| rs12411407 | 1.00[ASN][1000 genomes] |
| rs12411479 | 1.00[ASN][1000 genomes] |
| rs12412412 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12412762 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12412999 | 0.91[ASN][1000 genomes] |
| rs12413653 | 0.82[ASN][1000 genomes] |
| rs12413682 | 0.82[ASN][1000 genomes] |
| rs12414332 | 1.00[ASN][1000 genomes] |
| rs12414521 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12415083 | 0.82[ASN][1000 genomes] |
| rs12415870 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12416060 | 0.82[ASN][1000 genomes] |
| rs12416068 | 0.82[ASN][1000 genomes] |
| rs12416075 | 0.82[ASN][1000 genomes] |
| rs12416199 | 0.84[AMR][1000 genomes] |
| rs12416493 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12768613 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12769764 | 0.89[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12779139 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12781912 | 0.91[AMR][1000 genomes] |
| rs1537835 | 1.00[ASN][1000 genomes] |
| rs17098720 | 1.00[ASN][1000 genomes] |
| rs17100316 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17102596 | 0.84[ASN][1000 genomes] |
| rs17606361 | 1.00[ASN][1000 genomes] |
| rs1832683 | 0.84[ASN][1000 genomes] |
| rs28365998 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs28538009 | 0.84[ASN][1000 genomes] |
| rs28539411 | 0.84[ASN][1000 genomes] |
| rs28539798 | 0.84[ASN][1000 genomes] |
| rs28550367 | 0.84[ASN][1000 genomes] |
| rs34148644 | 0.81[AMR][1000 genomes] |
| rs34749786 | 0.81[AMR][1000 genomes] |
| rs34816332 | 0.91[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs34870056 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35014047 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35025775 | 0.81[AMR][1000 genomes] |
| rs35180576 | 0.81[AMR][1000 genomes] |
| rs35395602 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35420115 | 0.91[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs36023925 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36073865 | 0.91[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3862518 | 0.91[AMR][1000 genomes] |
| rs3889823 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4387301 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4436490 | 1.00[ASN][1000 genomes] |
| rs4520539 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4633405 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs55666905 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55712842 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs55835350 | 1.00[ASN][1000 genomes] |
| rs55855057 | 0.92[ASN][1000 genomes] |
| rs56008106 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56122289 | 0.82[ASN][1000 genomes] |
| rs56196124 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56235549 | 1.00[ASN][1000 genomes] |
| rs56271768 | 1.00[ASN][1000 genomes] |
| rs56317427 | 1.00[ASN][1000 genomes] |
| rs56354422 | 1.00[ASN][1000 genomes] |
| rs57257258 | 1.00[ASN][1000 genomes] |
| rs61858980 | 1.00[ASN][1000 genomes] |
| rs61859008 | 1.00[ASN][1000 genomes] |
| rs61859012 | 1.00[ASN][1000 genomes] |
| rs61859013 | 1.00[ASN][1000 genomes] |
| rs61859014 | 1.00[ASN][1000 genomes] |
| rs61859016 | 1.00[ASN][1000 genomes] |
| rs61859022 | 1.00[ASN][1000 genomes] |
| rs61859977 | 1.00[ASN][1000 genomes] |
| rs61859979 | 0.84[ASN][1000 genomes] |
| rs61859980 | 0.92[ASN][1000 genomes] |
| rs61860016 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61860024 | 0.81[AMR][1000 genomes] |
| rs61860025 | 0.81[AMR][1000 genomes] |
| rs61860034 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61860039 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61860041 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61860042 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61860043 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61860044 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61860051 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs61860417 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61860420 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61860421 | 0.80[EUR][1000 genomes] |
| rs61860423 | 0.82[ASN][1000 genomes] |
| rs61860424 | 0.82[ASN][1000 genomes] |
| rs66622864 | 0.84[ASN][1000 genomes] |
| rs7080405 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7083964 | 0.84[ASN][1000 genomes] |
| rs7086876 | 0.82[ASN][1000 genomes] |
| rs7087728 | 0.84[ASN][1000 genomes] |
| rs7091280 | 0.82[ASN][1000 genomes] |
| rs7091430 | 0.82[ASN][1000 genomes] |
| rs728615 | 1.00[ASN][1000 genomes] |
| rs728616 | 1.00[ASN][1000 genomes] |
| rs73297466 | 0.92[ASN][1000 genomes] |
| rs7893241 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7902075 | 0.84[ASN][1000 genomes] |
| rs7906286 | 1.00[ASN][1000 genomes] |
| rs7907311 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLAC9 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014