SNP Report

Basic Infomation

Name	rs28538009 dbSNP
Location	chr:10,81887759
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1046707	0.84[ASN][1000 genomes]
rs12411407	0.84[ASN][1000 genomes]
rs12411479	0.84[ASN][1000 genomes]
rs12412762	0.84[ASN][1000 genomes]
rs12414332	0.84[ASN][1000 genomes]
rs1537835	0.84[ASN][1000 genomes]
rs17098720	0.84[ASN][1000 genomes]
rs17100316	0.84[ASN][1000 genomes]
rs17102596	1.00[ASN][1000 genomes]
rs17606361	0.84[ASN][1000 genomes]
rs1832683	1.00[ASN][1000 genomes]
rs28539411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539798	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28550367	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35014047	0.84[ASN][1000 genomes]
rs35395602	0.84[ASN][1000 genomes]
rs36023925	0.84[ASN][1000 genomes]
rs4436490	0.84[ASN][1000 genomes]
rs55835350	0.84[ASN][1000 genomes]
rs55855057	0.92[ASN][1000 genomes]
rs56140719	0.84[ASN][1000 genomes]
rs56196124	0.84[ASN][1000 genomes]
rs56235549	0.84[ASN][1000 genomes]
rs56271768	0.84[ASN][1000 genomes]
rs56317427	0.84[ASN][1000 genomes]
rs56354422	0.84[ASN][1000 genomes]
rs57257258	0.84[ASN][1000 genomes]
rs61858980	0.84[ASN][1000 genomes]
rs61859008	0.84[ASN][1000 genomes]
rs61859012	0.84[ASN][1000 genomes]
rs61859013	0.84[ASN][1000 genomes]
rs61859014	0.84[ASN][1000 genomes]
rs61859016	0.84[ASN][1000 genomes]
rs61859022	0.84[ASN][1000 genomes]
rs61859977	0.84[ASN][1000 genomes]
rs61859979	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859980	0.92[ASN][1000 genomes]
rs66622864	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080405	0.84[ASN][1000 genomes]
rs7087728	1.00[ASN][1000 genomes]
rs728615	0.84[ASN][1000 genomes]
rs728616	0.84[ASN][1000 genomes]
rs73297466	0.92[ASN][1000 genomes]
rs7906286	0.84[ASN][1000 genomes]
rs7907311	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PLAC9	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)