SNP Report
Basic Infomation
| Name | rs28539411 dbSNP |
|---|---|
| Location | chr:10,81887410 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1046707 | 0.84[ASN][1000 genomes] |
| rs12411407 | 0.84[ASN][1000 genomes] |
| rs12411479 | 0.84[ASN][1000 genomes] |
| rs12412762 | 0.84[ASN][1000 genomes] |
| rs12414332 | 0.84[ASN][1000 genomes] |
| rs1537835 | 0.84[ASN][1000 genomes] |
| rs17098720 | 0.84[ASN][1000 genomes] |
| rs17100316 | 0.84[ASN][1000 genomes] |
| rs17102596 | 1.00[ASN][1000 genomes] |
| rs17606361 | 0.84[ASN][1000 genomes] |
| rs1832683 | 1.00[ASN][1000 genomes] |
| rs28538009 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28539798 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28550367 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35014047 | 0.84[ASN][1000 genomes] |
| rs35395602 | 0.84[ASN][1000 genomes] |
| rs36023925 | 0.84[ASN][1000 genomes] |
| rs4436490 | 0.84[ASN][1000 genomes] |
| rs55835350 | 0.84[ASN][1000 genomes] |
| rs55855057 | 0.92[ASN][1000 genomes] |
| rs56140719 | 0.84[ASN][1000 genomes] |
| rs56196124 | 0.84[ASN][1000 genomes] |
| rs56235549 | 0.84[ASN][1000 genomes] |
| rs56271768 | 0.84[ASN][1000 genomes] |
| rs56317427 | 0.84[ASN][1000 genomes] |
| rs56354422 | 0.84[ASN][1000 genomes] |
| rs57257258 | 0.84[ASN][1000 genomes] |
| rs61858980 | 0.84[ASN][1000 genomes] |
| rs61859008 | 0.84[ASN][1000 genomes] |
| rs61859012 | 0.84[ASN][1000 genomes] |
| rs61859013 | 0.84[ASN][1000 genomes] |
| rs61859014 | 0.84[ASN][1000 genomes] |
| rs61859016 | 0.84[ASN][1000 genomes] |
| rs61859022 | 0.84[ASN][1000 genomes] |
| rs61859977 | 0.84[ASN][1000 genomes] |
| rs61859979 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61859980 | 0.92[ASN][1000 genomes] |
| rs66622864 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7080405 | 0.84[ASN][1000 genomes] |
| rs7087728 | 1.00[ASN][1000 genomes] |
| rs728615 | 0.84[ASN][1000 genomes] |
| rs728616 | 0.84[ASN][1000 genomes] |
| rs73297466 | 0.92[ASN][1000 genomes] |
| rs7906286 | 0.84[ASN][1000 genomes] |
| rs7907311 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLAC9 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014