SNP Report
Basic Infomation
| Name | rs3862518 dbSNP |
|---|---|
| Location | chr:10,81917957 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 80)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10466226 | 1.00[CHB][hapmap];0.90[GIH][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10466228 | 1.00[CHB][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201964 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201966 | 1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11201972 | 1.00[CHB][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11202031 | 1.00[ASN][1000 genomes] |
| rs12256429 | 1.00[CHB][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes] |
| rs12257082 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12268619 | 1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12411386 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12411407 | 1.00[CEU][hapmap] |
| rs12411989 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12412412 | 1.00[ASN][1000 genomes] |
| rs12412762 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs12413653 | 1.00[CHB][hapmap] |
| rs12414521 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12415870 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12416199 | 0.93[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12763392 | 1.00[CHB][hapmap];1.00[GIH][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12768613 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12769115 | 1.00[CHB][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12769764 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12777867 | 0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12779139 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12779955 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12781912 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1537835 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs17098720 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs17100316 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17606361 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs2228427 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2304410 | 1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28365998 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34100029 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34148644 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34162901 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34332933 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34386571 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34749786 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34816332 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs34870056 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35014047 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35025775 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35180576 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35395602 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs35420115 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs35483545 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35497678 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs36023925 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs36073865 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3851055 | 1.00[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs3889823 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4520539 | 0.85[CEU][hapmap];1.00[CHB][hapmap] |
| rs4633405 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55666905 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55712842 | 1.00[ASN][1000 genomes] |
| rs56008106 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56140719 | 0.91[AMR][1000 genomes] |
| rs56190825 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56196124 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs61860016 | 0.91[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs61860024 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860025 | 0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860034 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860035 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860036 | 0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61860039 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860041 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860042 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860043 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860044 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860045 | 0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61860047 | 0.85[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs61860051 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6585424 | 1.00[CHB][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6585454 | 1.00[CHB][hapmap];0.97[GIH][hapmap];0.82[MEX][hapmap];1.00[ASN][1000 genomes] |
| rs7080405 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes] |
| rs728616 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[MEX][hapmap] |
| rs7893241 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[MEX][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7907311 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ANXA11 | Proximal transcriptional regulation |
| ANXA11 | Distal transcriptional regulation |
| ENSG00000237523 | Distal transcriptional regulation |
| ANXA11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014